HsaINT0001893 @ hg38
Intron Retention
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1056998-1058045:-
Coord C1 exon
chr17:1057970-1058045
Coord A exon
chr17:1057103-1057969
Coord C2 exon
chr17:1056998-1057102
Length
867 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
3' ss Seq
TCTCTCGGCTCTCCCTCCAGATC
3' ss Score
12.28
Exon sequences
Seq C1 exon
AGTTACCTGTTCCTACTGTCCTCGGACTACGAGAGGTCAGAGTGGAGAGAAGCAATTCAGAAACTACAGAAGAAGG
Seq A exon
GTAAATTCCTGCCTCTTCCACGCTCCCCAATGATGTCCGTGGCATTGATGGGCCTTTTGTATTTCTAAGCGTTTCATGTCCAGTATCACGTCTTTGGCCCTCGCAGTCACCCTCAGAGGTGCCAGGGTGAGCGTTTAAGGATGTTACGGATTAATTGAGACCCAAAGAATCTAACTGATTGGCTGAAAGACATGATGATTTAGTCCTGGGACTGGACCCAGAGCCCAGCCTGGGCTTTCTCTCTCTCTCTACCTCTCTCTCTCTCTCACACACACACACACAGAGACACACACACACACACACACACACACATACACACATACACAGAGGCTGGGTACGGTGGCTTACGCCTGTAATCCCAGTCAGGAGTTTGAGATCAGCCTGGGCAACGTGGTGAAACCCCGTCTCTACTAAAAACACAAAAATTAGCCAGGTGTGGTGGTGGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAAGCAGGAGAATCCCTTGAACCTGAGAGGCGGAGGTTGCAGTGAGCTGAGATCACAGCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTTTAAAAAAAAAACGAAAACAAAACGCATACACCACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAACCTCTTCAGTTAGATTCTCCTACTCTGACCCCTCTCGCAGCATCTACACCAGTCCTGCTGTGTCCACAAATCCTTCCCCCTCCCTCGCAAGGACCAAGTCTGCCCCAGGGATTAAGCCGTCTTCCTGCAGCAGCCCCCAGGGAAGAGCAGCCGGTCCTGGTGGACCAGTGCCCACGCTCCCTTCTCTCTCGGCTCTCCCTCCAG
Seq C2 exon
ATCTCCAGGCCTTTGTCCTGAGCTCAGTGGAGCTCCAGGTGCTCACAGGATCCTGTTTCAAGCTTAGGACTGTACACAACATTCCTGTCACCAGCAATAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842:ENST00000302538:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.6=88.5)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development