HsaINT0001893 @ hg19
Intron Retention
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:81]
Coordinates
chr17:960238-961285:-
Coord C1 exon
chr17:961210-961285
Coord A exon
chr17:960343-961209
Coord C2 exon
chr17:960238-960342
Length
867 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
3' ss Seq
TCTCTCGGCTCTCCCTCCAGATC
3' ss Score
12.28
Exon sequences
Seq C1 exon
AGTTACCTGTTCCTACTGTCCTCGGACTACGAGAGGTCAGAGTGGAGAGAAGCAATTCAGAAACTACAGAAGAAGG
Seq A exon
GTAAATTCCTGCCTCTTCCACGCTCCCCAATGATGTCCGTGGCATTGATGGGCCTTTTGTATTTCTAAGCGTTTCATGTCCAGTATCACGTCTTTGGCCCTCGCAGTCACCCTCAGAGGTGCCAGGGTGAGCGTTTAAGGATGTTACGGATTAATTGAGACCCAAAGAATCTAACTGATTGGCTGAAAGACATGATGATTTAGTCCTGGGACTGGACCCAGAGCCCAGCCTGGGCTTTCTCTCTCTCTCTACCTCTCTCTCTCTCTCACACACACACACACAGAGACACACACACACACACACACACACACATACACACATACACAGAGGCTGGGTACGGTGGCTTACGCCTGTAATCCCAGTCAGGAGTTTGAGATCAGCCTGGGCAACGTGGTGAAACCCCGTCTCTACTAAAAACACAAAAATTAGCCAGGTGTGGTGGTGGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAAGCAGGAGAATCCCTTGAACCTGAGAGGCGGAGGTTGCAGTGAGCTGAGATCACAGCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTTTAAAAAAAAAACGAAAACAAAACGCATACACCACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAACCTCTTCAGTTAGATTCTCCTACTCTGACCCCTCTCGCAGCATCTACACCAGTCCTGCTGTGTCCACAAATCCTTCCCCCTCCCTCGCAAGGACCAAGTCTGCCCCAGGGATTAAGCCGTCTTCCTGCAGCAGCCCCCAGGGAAGAGCAGCCGGTCCTGGTGGACCAGTGCCCACGCTCCCTTCTCTCTCGGCTCTCCCTCCAG
Seq C2 exon
ATCTCCAGGCCTTTGTCCTGAGCTCAGTGGAGCTCCAGGTGCTCACAGGATCCTGTTTCAAGCTTAGGACTGTACACAACATTCCTGTCACCAGCAATAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-ABR:NM_001092:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(19.8=92.3),PF063236=Phage_antiter_Q=FE(27.2=100)
A:
NA
C2:
PF063236=Phage_antiter_Q=PD(10.9=27.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)