DreINT0000248 @ danRer10
Intron Retention
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61868911-61871019:+
Coord C1 exon
chr5:61868911-61868986
Coord A exon
chr5:61868987-61870914
Coord C2 exon
chr5:61870915-61871019
Length
1928 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TGTGTGTTTGTGTGTTTCAGACC
3' ss Score
11.43
Exon sequences
Seq C1 exon
AGCTACCTGTTCCTGCTGTCCTCAGATTATGAGAGGTCGGAATGGAGGGAAAGCATTCAGAAACTGCAGAAGAAAG
Seq A exon
GTTAGATTACTTGTCCTATTTAAATACAGAATTGTTCTCCACTACAGCGGCACATTATCATTACAAAATGACACAATCCATAAGCCACTCCAGTACTGCTCAGTGTTTAAATCTATAGGTCTCCACTAGAGGGCCTTGTTTTGCAGGATTATTATTGTTTTCTATTATTATTTGCAAAATGTAATATTGAATAATTCTATGAGTATATCAAAGAGCATCACACTACTGAAAATGCAGTGCTGAAATCTTAGGTAATATTAATTTATTTGTGAATTTTGTTTGCACTTTAATTTAAGTGCCACTTTTTACTACTGGGTTATTACCAGTTTATTAAGATATTGTTTTATTTATTAAGTATATTTTTATTCTACATCCCTAATCCAACCCAATACCTAAACCTCTACTACTTTACTAATTAATAATAAGTAGCAAAATAGTACTTTATTGAGCTAAACGTCTTAGTTATTGGTTGTGGTCAAGAATTAAACCAGAAAGTTGGAGAAGCAAATAAGCTTTTTTTGGGAAAAAAAATCTATTTATTATGCACTTTAATCTTTAAAACTTTCCACAACTGCTACACTGCAAAAAAAAAAAAAAGAAAGAAAAGATAAGAAAAAGAAAAATCCTACTTATTGTTTTTGTCTGGTTTCTATCCACAAATTCTTAAATCAAGAAGCTTTTTTTTAGACAATAATAAAAAATTCTTGTTTTGAGAAATAATATGCCAAAATGAGTTTTTCCGGGCGAGGCAGTGGCGCAGTAGGTAGTGCTGTCACCTCACAGCAAGAAGGTCACTGGTTCGAACCTCTGCTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCCCCCTGCCTTCGCGTGGGTTTCCTCCGGGTTCTTCGGTTTCCCTTACAGTCCAAAGACGTGCGGTACAGGTGAATTGGGTAGGCTTAATTGTCTGTAGTGTATGAGTGTGTGTGTGAATGTGTGTGTGGATGTTTCCCAGAGATAGGTTGCGGCTGGAAGGGCATCTGCTGCGTAAAAACTTGCTGGATAAGTTAGCGGTTCATTCCGCTGTGGTGACCCCAGATTAATAAAGTGACTAAGCCGACAAGAAAATGAATGAATGAGTTTTTCCATAACCATTTAACTTCCCCACCAATAAAAAATTTGATTGCATTTCTTAACTGCTAATGCCACTAGTTATCACACACAATACATTTTGTTTTTCAACACATCCCATAGTTTCTAAAATATTGACCAAATGGTTGATGTGTCAGTTTATGGTAAATGTACCGGAATTAATACATTTACTATAAAAAATCTGAAAATATGAAGTGTAAGACCATTTTTGTTTTCTTAAATATATATAAAAAAAAAAACATTTTCAAGTATGCCATAAAATATTTTAGATTCTCATTTAACATGTTTTCTTGTTTTTTTCTTGTTATTTATTATTATATTTTTTTTACAATAAAACCCAAATCAAGTGTAGTAGTGCAACACCATCATTTTTGTTTGATTTTTAAATTTTTTTTTTTTGTAAGCCAACAATGCTGTGCGTGTAAACCATTATATAACAGTCATTCTTTAAATGAATTTAACAGTATTTAAAACAGACGAAATATGGTCAAGCATTTGGTAGAGCAGGCAGTCAAAGGGTTAAGACAAGCAAAATAATCTGCTAGTGGGGTAAGCAAAATAATGTTGTTTTTCCTTTTGATAATAGATTATTTTGCTTGTCTTAAGAAAAAAATCACAAATTTTTGTGTAATTCCTAAAACAAGACAATATTTTTTGCTAGTCTAGAAAACGCTTCTTGATTTTATAGTAAGAAAAGAAGTAAAAAGGTAATAAAAGTTTTTTTTTTTTCAAAAAGCATAGCAGTGTCACTAAAATGATAATATCACAGCTGTGTTTAGTTCATAGTGTGTGTTTGTGTGTTTCAG
Seq C2 exon
ACCTGCAGGCATGTGTGTTGAGTTCAGTAGAGCTGCAAGTGTTAACCGGCTCATGTTTTAAACTCAGAACTGTTCACAACATCCCCGTCACCAGCAACAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587:ENSDART00000082965:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.5=88.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]