GgaINT0132812 @ galGal4
Intron Retention
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6329331-6329662:+
Coord C1 exon
chr19:6329331-6329406
Coord A exon
chr19:6329407-6329557
Coord C2 exon
chr19:6329558-6329662
Length
151 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CCTCTGCTGTCCTCTCGCAGACC
3' ss Score
12.28
Exon sequences
Seq C1 exon
AGCTATTTGTTCCTGCTGTCCTCTGACTACGAGAGGTCCGAATGGAGGGAGGCCATTCAGAAACTGCAGAAAAAAG
Seq A exon
GTAAGTCTTGGCCTGTTGAGGCCCCCATGGGTCATCTTTTCTCTAGCATGCTGGGATGGGTTGGTCCCATGGGATTGCAGCCACTGCCATCCGGTCCCCGGGGCCAGCACTTGTCATGTCCCTCTGAAGCTCCTCTGCTGTCCTCTCGCAG
Seq C2 exon
ACCTCCAGGCCTTTGTGCTGAGCTCGGTGGAGCTGCAGGTGCTGACAGGGTCCTGCTTCAAGCTACGCACTGTCCACAACATCCCGGTCACCAGCAATAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364:ENSGALT00000006958:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.6=88.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTATTTGTTCCTGCTGTCCT
R:
ATCCTTATTGCTGGTGACCGG
Band lengths:
180-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]