Special

MmuINT0009167 @ mm9

Intron Retention

Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76269111-76269738:-
Coord C1 exon
chr11:76269663-76269738
Coord A exon
chr11:76269216-76269662
Coord C2 exon
chr11:76269111-76269215
Length
447 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
3' ss Seq
GCTCTCGGCTTCCCCCACAGATC
3' ss Score
10.84
Exon sequences
Seq C1 exon
AGTTACCTGTTTCTTCTGTCTTCTGACTATGAGAGGTCGGAGTGGAGAGAAGCGATTCAGAAGCTACAGAAGAAGG
Seq A exon
GTAAAGTCCTGCCTGGTTCCGTACTGCTCTGAAGGTGTTCTTGGCATCAAGGACCTTGTGTCTTTCCAAGCTTGTTACCTCCAGTGGCTCTCTTTAGCCCTCATAGTCTCCTTAAGATGCCAGGGAGGTGGCACTCTTGGGGTGTTACTCTCTGTTGAGGTCCAATTAAGCCACACAGTGAATTCATGACAGGCTATCTATGGTCCTAGGTTGGGTGTCCTTCCACTCCTTACTTCCCACTCACACACATGAGCCTCTTTGCATATATCTCTTACCTCTGACGACACCCACAGCTGTGCTCATGTGAATACCTGCAGGACTTACCCTTCGCCCAAAGAACCGACTCCAACACTAGACACTAAGCTGATTTCCTGAAGCGTCTGCAAGGATACCAGTAGGTTCTCGAACCTATAATGAAGCTCCCTCTGCTCTCGGCTTCCCCCACAG
Seq C2 exon
ATCTCCAGGCCTTTGTCCTGAGCTCTGTGGAGCTCCAGGTGCTCACGGGATCCTGTTTCAAGCTTAGGACTGTGCACAACATTCCTGTCACCAGCAATAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-Abr:NM_198018:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.028
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0016924=PH=PD(14.6=88.5)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000091551





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000068982, ENSMUSP00000072522, ENSMUSP00000104044, ENSMUSP00000104045
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr17:1057103-1057969 
LOW PSI
HsaINT0001893
(ABR)
Human
(hg19)
chr17:960343-961209 
LOW PSI
HsaINT0001893
(ABR)
Rat
(rn6)
chr10:64603875-64604302 
LOW PSI
RnoINT0011418
(Abr)
Cow
(bosTau6)
chr19:22388440-22388892 
LOW PSI
BtaINT0012209
(ABR)
Chicken
(galGal4)
chr19:6329407-6329557 
LOW PSI
GgaINT0132812
(ABR)
Chicken
(galGal3)
chr19:6273258-6273408 
LOW PSI
GgaINT0132812
(ABR)
Zebrafish
(danRer10)
chr5:61868987-61870914 
LOW PSI
DreINT0000248
(ABR (1 of 2))
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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