RnoINT0011418 @ rn6
Intron Retention
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64603770-64604378:-
Coord C1 exon
chr10:64604303-64604378
Coord A exon
chr10:64603875-64604302
Coord C2 exon
chr10:64603770-64603874
Length
428 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
3' ss Seq
CCACTTGGCTCCCCCCACAGATC
3' ss Score
10.52
Exon sequences
Seq C1 exon
AGTTACCTGTTTCTTCTGTCTTCTGACTATGAGAGGTCGGAGTGGAGAGAAGCGATTCAGAAACTACAGAAGAAGG
Seq A exon
GTAAAATCCTGCCCAGCTTCATACTGCTCTGAAGGTGTCCTTGGCAGCAAAGGGCCTTGTGTCCTTCCAAGCTTCTTCCCTCCAGTGTCTCTTTAGCCCTCAGAGTCACCTTAAGATGCCAGGGAGGTGGCATTCTTGAGGTGTTACTATCTGTTGAGGTCCAATGAATTCATAACACGCCACCTAGGGCTCTGGGTTGGGTGTCCTCTTGCTTCCCCCCCCCACACACACGGGCCTCTTTACTTACCGCTTTTGCCTCTGGCATGCCACCGCTGTGCTCACGTGAATATCTGCGGGACTTTCCCTTCGCCCAAAGATCCAACTCCAACACTAGTAACTGAGCTGAGTTCCAGAAGCGTCTGCAAGAAGGGCAGTAGGTTCTTGTGGGCCTATAATGAAGCTCCCTCTCCACTTGGCTCCCCCCACAG
Seq C2 exon
ATCTCCAGGCCTTTGTCCTGAGCTCTGTGGAGCTCCAGGTGCTCACGGGATCCTGTTTCAAGCTTAGGACTGTGCACAACATTCCTGTCACCAGCAATAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837:ENSRNOT00000080703:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.6=88.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]