BtaINT0012209 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22388364-22388997:+
Coord C1 exon
chr19:22388364-22388439
Coord A exon
chr19:22388440-22388892
Coord C2 exon
chr19:22388893-22388997
Length
453 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TCTCTTGGCTCCTCCTACAGATC
3' ss Score
10.24
Exon sequences
Seq C1 exon
AGCTACCTGTTCCTACTGTCCTCAGACTATGAGAGGTCAGAGTGGAGAGAAGCGATTCAGAAACTGCAGAAGAAAG
Seq A exon
GTAATGCCCCACCTCTACTCTACGCTGCGCTGCTGGTGTCCGTGGCAAGAGAGGGCCTTCTGCATTTCCAAGCACTTTGATGTCCACTGGCTCCTCTGATGCCAGGGCAGTAACATCTTAACTGATGTTACTGATCAGTTGAGGCCCAAAGAATTTAGGTGATTTGCTTAAGAATGTATAGTGAATTGTCAGCAGGACTGGACCCAGAGCCCAGAGTTACCCGTCTGTCTTGCTGTCATGTACATAATTCATGAACCTCTCCAATTAGATCCTGCGCTTCTTATCCTTCTGGCAGCACCCCTGACTCTCCCCAGCTGAGTGTCTACTCCCCCTTCCAATGACCGACTCTGCCCTTAGAGCTAATCTTTGTTTCCTGAGGTAGCCCTCAAAGAAGAGCAGTGGGTCCTAGTGGACCTGTGAGGACATTCCGCTCTCTCTTGGCTCCTCCTACAG
Seq C2 exon
ATCTTCAGGCCTTTGTCCTGAGCTCGGTGGAGCTCCAGGTGCTCACAGGATCCTGTTTCAAACTTAGGACTGTACACAACATTCCTGTCACCAGCAATAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424:ENSBTAT00000011083:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.6=88.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development