GgaINT0133914 @ galGal3
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
NA
Coordinates
chr21:4182017-4184136:-
Coord C1 exon
chr21:4183886-4184136
Coord A exon
chr21:4182104-4183885
Coord C2 exon
chr21:4182017-4182103
Length
1782 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TACCTGTTTCTTCCTCCTAGTTC
3' ss Score
8.81
Exon sequences
Seq C1 exon
CGGACTACAGTACCAGTGAGATGCTGGTGAACATGGGAAACCTCCCTCTGGATGAATTCTATCCAGCTGTCTCTATGGTGGCACTGATGAGAATTTTCCGAGACCAGTCCTTGTCCCAGCACCACACTATGGTGGTTCAGGCCATCACCTTTATTTTCAAATCCCTTGGACTGAAGTGTGTGCAGTTCCTGCCCCAGGTCATGCCAACGTTCCTTAATGTAATAAGGGTTTGTGATGGTGCCATCCGAGAG
Seq A exon
GTGTGTACACTCCTTCCCTCTTATTCCACTGCCTTAAAATAAGAATGCATTTACAAGAGAATGCAGCTGGTTTGGGGCATTGCTGTGCTGTGTGTTGCTGTCTAGCATGCTGCAGAAGTGAGATACAGCTCTGCCTTTTTTCTCCTTTGAGCATTTGATGGAACATCCAGTGGAAAAAAATGTTCTGCTTCTTATTGAAACAGCTGCTTCTGAGCACAATCCTTATGTGGACAATATCTCATTCTGTTGGTTTTTTTCCATCAAGCTGTTGGTTTTTTTTTTTCCTAGGAAAACAGCTTGTGCAGCTCCCAGAGCTGTCAGTGACCTCTGCATTAACGTACTGTTGCAGTTATTAAATAGTACCGGTAGAATCTTTAAGTTTCTGATACAACTGTGTACTTTGGCACATCTGTGAGAAGGAAAGTTCAGTTTGCTACAGTCTGCTAACATCCAGAGCAGCACGGACAGCAATTCCACAATAGCATTTTCTCTTCCTTCCCACTTAAGTTACAGTTTTAGGAGGAAATGAGAGTTGTGATAATAGGCCTAAGGTGGTGCATCTGACCAGAGATGGCTGCTGTTTGCCAAGCCTTTTTCTCAGGCTGCTGAAAAGAATCTCTGGGGTGGGAAGGGCCATTTGTATTAATTGATGATACTGTGCTTTATAGGTGGGATGGATGCTTCCTTAGCAGATTCCCAACCCTGCTATAAAACCGCTGTTTTCTCCCGTACTGAACTACTACTCAGATTGGAAGGAAAAGCTCTCAGGGTTCTGGGTTGGCTGAACTCTTGGACATGGCTGATCTAATTGCTGAAAAGCTAGGTAGTTGTGCACACCTGTTAAAAATGTTTAGGTAAAAGAACATGGTGAAAGTATACTGAGGACAAGAGCTGAGGTGGGTACATATGGCACTAAAGCCTAAAGGAAGCAGGTCCTTGTCCTGCACGTAAGCATGCTTTCTCAACACACTCCAAAATAAGGTGCAGCATAGGAGCTCAGAGTTCATTTTTGGTAAATGTAGGCGTACTGCTCTCACTAAAGAAGTTTGTGTTATTTCTTCCTCAGTTTTTGCACCTGTTGTCTTTCTCTGAGCTTTACTTTCACTGCATTTTACCCACCTTATTTTATACAAATTTCAAAAATAAATTCATTGCCACAAGTGAGTGCATAAGATTGTATTAGGGGAAAAGGAATTGCAAAATTGTCATAGTATCCATGAATAAAATTGTCTCAAAGTTATTGTTATCTTATTGTATCAACCATCATTCCAAAAAAAATAAGTAGTGATATATTTGGCTATATATCAAGGAACAAACTCTCTTCCCCCATGATTTTTCACTGGTGTATCTTGGTGGGGATGGGAAAGAGTGCAGGAGTATTTTAAAATGTGTGCCAGTTTGGCTGACAGGCAGGGGGAAAGTTAGGGGCTGAATTTTTAGAAGCATCCTTCAAATCTGAATCACACAGTTCTGTTGTAGTTGAAGTCTTGGCATTTGTGCTTGCAAATTTATTCTGACACATCCTAATAAATTTGCTTACCTAAATATCTATGTGCTTGACTGTATGAGGCTTGGAGCTCATAACATTTTTGATACAAGTTAAAAAAAAAAATTAAAAAAACAAAAACCAAACACCACTGCACTGCAGCCACTAAGAATTTAGCCCCACTTCTTGAGCATATGCATGCTATTTGATAAATGAACTTGTGAATTGCTTGTGAAACACAGTTTGCTGTGGTGTTCAAATAACTACTTTGATCACTACCTGTTTCTTCCTCCTAG
Seq C2 exon
TTCCTGTTCCAGCAGCTGGGGATGTTGGTGTCCTTTGTGAGAAGTCACATTCGGCCCTATATGGATGAAATTGTCACCCTCATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF118653=DUF3385=FE(48.5=100)
A:
NA
C2:
PF118653=DUF3385=PD(7.6=44.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACTACAGTACCAGTGAGA
R:
TCTCATGAGGGTGACAATTTCA
Band lengths:
338-2120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]