GgaINT0137833 @ galGal3
Intron Retention
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5640878-5641339:+
Coord C1 exon
chr23:5640878-5640984
Coord A exon
chr23:5640985-5641219
Coord C2 exon
chr23:5641220-5641339
Length
235 bp
Sequences
Splice sites
5' ss Seq
ATCGTAAGC
5' ss Score
6.08
3' ss Seq
CAGTGCGTTCTCCCCTGCAGGAG
3' ss Score
10.2
Exon sequences
Seq C1 exon
ATGTGGATGTTCCATCTCCGGATGAGAAGTCAGTGATAACTTACGTGTCTTCAATCTACGATGCCTTTCCCAAAGTCCCTGAAGGAGGAGAAGGGATCAGTGCGATC
Seq A exon
GTAAGCAGTGCGGCTCAGCACCCAGATTGCGGGAGGGGGACTCGGAGGTCTCCCTTCAGCCCTTACAGGCTGGGAGCAGCCTGCAGGCGGAAGGAGCTTCCCCATCAGCCTTCCCAAGCAGCACGGGCTGCTGGCTGTTTGCTGCCGGGCGCTCCTGTTGCTGTGCTGGGGGTGTGTTGTTCTGAAGGGGCGCAGGGACGTGGCAGCGCTGACCGCAGTGCGTTCTCCCCTGCAG
Seq C2 exon
GAGGTAGACTCGAGGTGGCTGGAGTACCAGACCCGCTTGGAGTCCCTCATCTCCTGGATCAAGCAGCACACGATACTCATGTCGGATAAATCCTTCCCCCAGAACCCCGTAGAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693:ENSGALT00000005857:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(22.5=63.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGTTCCATCTCCGGATG
R:
TTCAGCTCTACGGGGTTCTGG
Band lengths:
223-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]