RnoINT0088199 @ rn6
Intron Retention
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141193979-141194784:-
Coord C1 exon
chr5:141194678-141194784
Coord A exon
chr5:141194099-141194677
Coord C2 exon
chr5:141193979-141194098
Length
579 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAG
5' ss Score
7
3' ss Seq
TGTTTGCCTCCTGACTGTAGGAA
3' ss Score
8.35
Exon sequences
Seq C1 exon
ATGTGGATGTGCCATCTCCAGATGAAAAGTCTGTAATCACTTACGTGTCTTCCATTTACGATGCCTTCCCCAAAGTCCCTGAGGGAGGAGAAGGAATCAGTGCTACG
Seq A exon
GTAAAGGAGCATTTTCCTAAAACACCCACTCAGTGAGGTAGAAAGCCTCCATCCGACAGTGTTTGTTAGTTTCTTATGTTAGAGCCCTTTCACAAAGACCACCTGCACCTACATCATCTCTGTCGTAGTGGACGGTACCCCTGAGAAGGAGTCTAGGCATTGCTAATGTTGTGCCGTCTAACATACACCATTTGATGTTAAATGCCAGCAAAAAGAAAAAAGAAAACATTCTTTTTATCCCCAGCTGTAATTCAAGATGAAGCATTTTCTCAGCTACTGATAGAAGTTTGATTAGTCACCATGGCTGTGTGCTCTAGAGAAGCCTGCTGCCTCAGCCTCACCATGTTGTAATTACAGTGTGAAGAAGCACCATGCCTGGAAATACTCTGGTTCATAATCATGGTGGCTTAGCTTATAGTCTTCCTACCTGTCAGGATATTGAATGCCAGCCCGAGATTCCTTGGGGAGCTTTGAGACTGAGAGAGAGTTTTATGTAATATGGAGTAGCCTTGGCTACTTTATCCTGTGCTGTGCTGAACAGTGCAAATCAGGTCTGTGATGTTTGCCTCCTGACTGTAG
Seq C2 exon
GAAGTGGACTCCAGATGGCAAGAATACCAAAGCCGAGTGGACTCACTCATTCCCTGGATCAGGCAGCATACAATCTTGATGTCAGATAAATCTTTTCCCCAGAACCCTGTTGAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047:ENSRNOT00000045400:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(22.5=63.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGTGCCATCTCCAGAT
R:
TTAGTTCAACAGGGTTCTGGGG
Band lengths:
222-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]