GgaINT0137889 @ galGal3
Intron Retention
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5699911-5700887:+
Coord C1 exon
chr23:5699911-5700114
Coord A exon
chr23:5700115-5700878
Coord C2 exon
chr23:5700879-5700887
Length
764 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
ACTGCGCCCCACCATTGCAGATT
3' ss Score
9.62
Exon sequences
Seq C1 exon
CAACTGAGAGAGTCTATTGCTGAACATAAGCCTCATATCGACAAGCTGCTGAAAATCGGACCGCAGCTCAAGGATCTCAACCCTGAGGAGGGGGAGATGGTGCAGAAAAAGTACTCGACAGCAGAGGCCATGTATGCCAAAATCAAGGAGGAGGTGTGCCAGCGGGCTCTCGCACTCGATGAAGCCGTCTCGCAGTCCACTCAG
Seq A exon
GTACGCCTGTGGGGCGCCGGGCAGCCACGTCCTGCAGCAGGTCCTCAAACCCTGTGCGGGGTGCAGGAGAGGCAGACACCTTCAGGGTGGTTTCAGCCGACTGCTGGGCAGTTCTGCTCCGCAGTGCCTGCAGGAGGAAGGGAGGAGGAGTTTGAATCCTGATGTGGTAAATAGTCATAAATGTTTATGGCCTCAATAATGATACTCATTCAGTGGGGCCATCCTGGCATCTGCCCAAGGCTGGGAGGGCCCAGGGAGCCCCTTTGGACAGCTTGGAGAGAGAAGTTTCGTTTCTGATAAGCGAAGCACTGCTGTATGTGAGCAGCACGGGGTCAACTGTAGGGGAGAGATAAGTGTCCCAGGGCCTGGGCACCCCCAGGGGACACTGCGGGTTGGTGGCTGCAGAGCAGGGGTAGGAGAGGAAGGGCAGAGATTGGAGGTGCCGAAGTCCAGGGAAAGGTAAAGAGCTCCTGGCAGCCGGATGCAGGCCAAAGGTTCCCAGGTAGCTGCATCTCACCCCGTGGTCCTGCAGTGCTGCTGGCTTTTGTCACGTCTGGGTTTTATTTTCTTTATTCCTGTATTGTTTAGTCACTTCTCTTGGTTTGCATTGTATTAACTCCGAGTTTTTCCCCCCACACACATCCCTCCCGTCTCATCTCTCACTCACATTGTGGATTGTGTTATCTGTGTGTGTTGCTGCCTGTTCCTGTCTTCCCCACATGGTCTCATTTCATTGTTGTGTTGACTGCGCCCCACCATTGCAG
Seq C2 exon
ATTACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693:ENSGALT00000005857:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(56.6=88.2),PF0043516=Spectrin=PU(0.9=1.5)
A:
NA
C2:
PF0043516=Spectrin=FE(1.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]