HsaINT0098158 @ hg19
Intron Retention
Gene
ENSG00000127603 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:13664]
Coordinates
chr1:39901230-39902153:+
Coord C1 exon
chr1:39901230-39901433
Coord A exon
chr1:39901434-39902146
Coord C2 exon
chr1:39902147-39902153
Length
713 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTGTGTTGACCGCGCCCACCATT
3' ss Score
-16.81
Exon sequences
Seq C1 exon
CAATTAAGGGAATCTATTGCTGAACACAAACCTCATATTGACAAACTACTAAAGATAGGCCCACAACTAAAGGAATTAAACCCTGAGGAAGGGGAAATGGTGGAAGAAAAATACCAGAAAGCAGAAAACATGTATGCCCAAATAAAGGAGGAGGTGCGCCAGCGAGCCCTGGCTCTGGATGAAGCCGTGTCCCAGTCCACACAG
Seq A exon
GTATGTGTGTGTCTGACACTCATAACCTTGAATTGTCTACTGTTCTAAACAAGAGGTCTCTGTATCAGGTATGTCTCTGTGCTCAGGAATGTCCAGAGCAGCATGTTAATACGTGATCGGTAGATAGAACAGAAAGCTTAGCCTATCTTCATTTTTATTCCAAGGAACATTGGCATACTGACATTCTAAGGAGAGTGAAATGAGTCTTGGCTGGTATATATTGTCTGTTGATGGTTTCTCTGAAAACTTTATGTTGTGATGATCCTTTAGCAGATGATTTTGGATAAATTTACCTTGCAGATTCAAAAGCAGTGACTGCCTCAAAAAAGTACTTATTGAACCTGTTACTTTTTTGCTTTAGAGCAACAGCACATTAGTTTTCTTAAGCAACCAGCTAACTCATAGTTTAAGATGCTTGAGTAAGGAGTAGTAAGAGCCAAAGAGAAGCATAAACCAGCAGAGGGATTTAAAGCATGTAACTACATACTTTCAACTAATATATTACTCTTAGTGGTACTGTTGTCATGTCTGGGTATTTTATTCCTATGTTTAGTCAATATTCTTGGTTAATATTTGTACTTACTCAAGTTTCTCCCCCCACCTTCCGTCCCATCTCTCACTCACATTGTGGAATGTGTTACTTTGTGTTGTTGCTGCCTGCTCCTGTCTTCCCCACATCGTCACATTTCATTGTTGTGTTGACCGCGCCCACC
Seq C2 exon
ATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127603-MACF1:NM_012090:66
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(56.6=88.2),PF060097=Laminin_II=PU(52.4=79.4),PF0043516=Spectrin=PU(0.9=1.5)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)