GgaINT0140184 @ galGal3
Intron Retention
Description
NA
Coordinates
chr25:1823064-1823755:+
Coord C1 exon
chr25:1823064-1823192
Coord A exon
chr25:1823193-1823648
Coord C2 exon
chr25:1823649-1823755
Length
456 bp
Sequences
Splice sites
5' ss Seq
CAGCTGGCT
5' ss Score
-5.31
3' ss Seq
TGGACCTGCTGTGGGTGTGGGTG
3' ss Score
-2.26
Exon sequences
Seq C1 exon
CCCTTCAGCTGCGGGAAGCCATGGCAGCAATGAGAAGGTCTGCCCAGGATGTTCAGAAATTTATGGATGCTGTGCACAGGAGAACGAACGCCCAGGATGCACTGAAAGGTCAGTGTGAGCTTCCTGCAG
Seq A exon
CTGGCTGGTGTGTGCTGGCACTCGTGTGGGCCCCAGCCTCGATGCTGCCTCAATCCTCCACCCGTTGGTTTTCATTTTGGAGAAGAAAAACACAGCTGTGTTCTTTTCTGTTTCCCTGCTGGGAAGACCCGTTAGGGTGTGTGGATTCCAAAGTCCCATTTCGTTTCTTTAAACCCTTTTTAAACCCCAATACTGATGGTGGCTTTCCTGTAACAGTGCTGTGCCATCCTCCCTTGCTGATTGCTCCGTCCTATAGAGCTGAGGCACTTTACTGACTGCAGCAAAGGAAAGCAGGGGCGCTTCCTGCTTTGGGTCTGACAGATGTGCTTCCAGTTGCAAGCATAGCAGAGTGAGTCTCTGGGATGTTTCTAACCTGGCTGTTTTTTGGGGTAGATGCACAAACCCCTCAGCAAGCTCCTGGTGCTCCCCAGTCTTCTGGACCTGCTGTGGGTGTGG
Seq C2 exon
GTGATCTCAGCAACGATGGCGATCTGAAGGTTGGCATGAGGATCCTGGGCAAGAAGAGAACCAAAACGTGGCACAAAGGAACTCTGATTGCCATCCAGACAGTCGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024051:ENSGALT00000040574:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCAGCTGCGGGAAG
R:
CCGACTGTCTGGATGGCAATC
Band lengths:
235-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]