BtaINT0131664 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19859916-19861148:-
Coord C1 exon
chr3:19861049-19861148
Coord A exon
chr3:19860042-19861048
Coord C2 exon
chr3:19859916-19860041
Length
1007 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
CAACTTTGCTTTCTTCCTAGGAA
3' ss Score
8.99
Exon sequences
Seq C1 exon
CTCCGTGAAGCTATGGCTGCCTTAAGAAAATCGGCTCAAGATGTCCAGAAGTTCATGGATGCTGTCAACAAGAAGAGTAATTCCCAGGATCTACACAAAG
Seq A exon
GTTAGAGTCAGGAGGCATCTTGGTATAGGTGCAGAGGTGAAGTCCTACAGAGATTTCATGGCTACTGACTGTGTTTTAACATTTCAATATCTTTCTCTACCTCTGTAGGATTCTTTTAATACCACAGATTCTCCTTGCTGTTTGCTTAAGTCTTTTTTTTTTTTTTGGCTGCATCACTCAGCTTGTAGGGTCTTAGTACCCTGACCAGGGATCGAACCCAGGCCCACAGCACTGAAAGTGCAGAGTCCTAACCACTGGACCACTGGGGACATCTCTTGGCTTAAGTCGTTTGTCTGCTGGCTTTCTACCATGTGATGCCTTTGTCCAAATACCTTTTTAGCTCCGTGCTAATGATACCTTCTTTCTTTCTTTCTTTCTTTTTTTGATACCTTCTTTCAGATGAAGGTTAAAGAAAACAGTAACTCAAACTCGAAAAAAGAGGTCTGAAGGAAGCTTTGTTTGTAGAATGCAGCTATTAAGAGATCCCTCCCAGGAAAATGATTTATAAAAGCTGTGCTGTGCTTAGTTGCTCAGTCATGTCAGACTCTGCCATCCCATGGACTGTGGCCCACCAGGTTCCTCTGTCCATGGGGATTCTTCAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGATCTTCCTAACCCAGTTATTAAACCCAGGTCTCCCACATTGCAGGTGGATTCTTTATGGTCTGAGCCACCATGCTGCTTGGCATTTAATGAGTAATAGTTAATGTTGTTAATAAGGAGTCAGAAATATTTGGTTACAGTGAGATGGTCTTGAGTTACATGTGAATTTCAATTCATATTTTTCCTGTTAGCGTAAAGAGTTGAGTCAACTGTGTCTTATATTTCTGCCCTTGGCCAAGGGAGCAGGAAAAGTGGTTAAGGATCAGAGATTACCCCATTTGTCCCAATAACCCAGTACCCTCTTTATTTTCCATTCTTTCCCCAATCTGTGCCATATCTCTTTATAGCAACTTTGCTTTCTTCCTAG
Seq C2 exon
GAACCTTGAGTCAGATGCCTGGAGAATTGAGCAAAGATGGTGACTTGGTCGTCAACATGCGCATCCTTGGCAAAAAAAGAACTAAGACGTGGCACAAAGGCACCCTTATTGCCATCCAGACAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=NA C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF150571=DUF4537=PU(19.4=55.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGGCTGCCTTAAGAAAATCG
R:
CTGTCTGGATGGCAATAAGGGT
Band lengths:
214-1221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]