GgaINT1003169 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L3I9]
Coordinates
chr25:1734095-1734776:+
Coord C1 exon
chr25:1734095-1734198
Coord A exon
chr25:1734199-1734654
Coord C2 exon
chr25:1734655-1734776
Length
456 bp
Sequences
Splice sites
5' ss Seq
TCAGTGTGA
5' ss Score
-4.32
3' ss Seq
GGTGCTCCCCAGTCTTCTGGACC
3' ss Score
-6.64
Exon sequences
Seq C1 exon
CTGCGGGAAGCCATGGCAGCAATGAGAAGGTCTGCCCAGGATGTTCAGAAATTTATGGATGCTGTGCACAGGAGAACGAACGCCCAGGATGCACTGAAAGGTCA
Seq A exon
GTGTGAGCTTCCTGCAGCTGGCTGGTGTGTGCTGGCACTCGTGTGGGCCCCAGCCTCGATGCTGCCTCAATCCTCCACCCGTTGGTTTTCATTTTGGAGAAGAAAAACACAGCTGTGTTCTTTTCTGTTTCCCTGCTGGGAAGACCCGTTAGGGTGTGTGGATTCCAAAGTCCCATTTCGTTTCTTTAAACCCTTTTTAAACCCCAATACTGATGGTGGCTTTCCTGTAACAGTGCTGTGCCATCCTCCCTTGCTGATTGCTCCGTCCTATAGAGCTGAGGCACTTTACTGACTGCAGCAAAGGAAAGCAGGGGCGCTTCCTGCTTTGGGTCTGACAGATGTGCTTCCAGTTGCAAGCATAGCAGAGTGAGTCTCTGGGATGTTTCTAACCTGGCTGTTTTTTGGGGTAGATGCACAAACCCCTCAGCAAGCTCCTGGTGCTCCCCAGTCTTCTGG
Seq C2 exon
ACCTGCTGTGGGTGTGGGTGATCTCAGCAACGATGGCGATCTGAAGGTTGGCATGAGGATCCTGGGCAAGAAGAGAACCAAAACGTGGCACAAAGGAACTCTGATTGCCATCCAGACAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024051:ENSGALT00000040574:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF150571=DUF4537=PU(19.4=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGCCATGGCAGCAAT
R:
CGACTGTCTGGATGGCAATCA
Band lengths:
222-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]