GgaINT0141266 @ galGal3
Intron Retention
Gene
ENSGALG00000002675 | SCUBE3
Description
NA
Coordinates
chr26:3975910-3982191:-
Coord C1 exon
chr26:3982075-3982191
Coord A exon
chr26:3976027-3982074
Coord C2 exon
chr26:3975910-3976026
Length
6048 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
CTCCTTCCCTCTCCCTGCAGAGA
3' ss Score
13.32
Exon sequences
Seq C1 exon
TGACGTGCAACTATGGGAACGGCGGCTGCCAGCACACCTGTGATGACACGGACCAGGGCCCCAAGTGTGGCTGCCACGTCAAGTTCTTGCTGCACTCCGACGGCGTCACCTGCATAG
Seq A exon
GTGGGTGCAGAGTCCCCATGAGGGATGTGGGGGATCTGTGTTGGGGCTTGGGGCCGCTCGCTCTGTGCCTGAGCGATGTGCCTTTGGGTGAAGGAGTGCTTTGGGGATGGGGCACTTCCTTCTGCCAGAAGTTCAAGGCTGATGCTGGAGCAGCTCGATGTGGGATGCTGCAAGCATTCGTAGATTTGATGCCATGTCACCACCCATAGGCACAGAGCAAAGTGATGCACTGGGAGCAAGAGTGGCTTTTGGGATGCTCTGGGCAGGGGGGACGTGGGGACAAATGCGTTGCGATTCAGTGTGCTGAGGTCCCCACCTGCCTTCATGCTGCAGGAGGGAAAGGGGTGTTGATGTCCATCACAGCAGCAATTGTCCCCATGGTGCCACCACCTCCATCCAACAGCAGCAGGGAGGGAGCTGGAGGGGACCATGTGCTCCATCCCAAGTTGGCATCGAGGGGTCTCAGCTCAGGAACAATTGTCTTGCAGAAGAAAAAAGAATAACCAACAACCCCGAGAGCCCAACCACCCCCAAACCGTCCTTTTCCTGTATGTGTTTTCAAACTGGGAAACATCAAACAGAGATAGAAGTTTTACTGGTTTCAGATGCTTGCGCTGCCTGACAGCTGATTTGATTTAAAAAAAAAAAATGTTACGTTTGGGGAGTGATGAAGTCCACAAATTGCTCCAGACATTTCAGTTCTTATTGCAAAATAATTAAAAAATAAAAAGGGGGGGGGGGGGGGGTTGGGAGCAGCTGGAGGCAGCAGCCAGCTTTGGGCTGCTCATGGCACAGGGACTGCTCTGTGCTCCCCAAGCTCTGACCTCAGGCCTGAACTGGGAGGGGGGGTCCATTCACTGCAGCACTGTGCCCCCAGCAGAGCCCCCTGCCCGCTCCCAGCCAGCTCTGTGTAGTGCTGTACCCCATCCTCAGGGCAGCAGGGAGCTGAGTGGGGTTTGCTCCATTGCACGCGTCTTCTCCCTGCTTGCTGCATCCCACCCCAGCTCAGCACCCAGCCGGGTTACTTTGCAGCCCACTCACCCCTTCTCTGTGTGTGTGGGGCACCGGGGGAGTGCTGCTGCCCAAAGGGTGGTGCTCCCCACAGGGCTCTGTTTGATGGAGGGTCTCAGCGTGGAGCCTCAGGTGCTGCAGGTGTGAGAGGGGCATCTCTGTGCTTCAGCAATCCCACGTTCTCCTGAGAGCCTTGACCAAAACGTGCCCTTTCTGCCCCAATCTGTGCACAGCATCTCTCAGGGTGGCACCTCCCATAAGCTCTGCTGCATCCTTGCAGGCTCTTCTCCCCACTCCCACCTTCCTGAGGGTGATGAAGCACCGTGACCACAGATTTTGGGGGGCAGCTCTGAACCCCCTGACCCCGTGCCTCCATCCACATGGCTCTGCAGGGACAGTGCTGTTCTGCACCATATCCCTGTGGGGGGGGGGGGGTGCCAGCACCCCCCCAGCCGCAGTGGGAACACTGTAGGATTGTGCTCTAGGGACAGATTTATGGCCGAGGTGGGGGCTGAGGTACCTGCTCGGATATTTATAACTGCCCGGGTTTGTTTTATGGCCAGGGCTCAGCAAACAGCCCCGCACCCCCCCCCACCCCACCCCAGTACTCCCACCGCCGCCCCCTCCCCTCTCTCCTTCTCCATTTCCTCTGAAATATTTCATCATTTCAAGGGGAATAAAGTTTCCAGCGTGGGGAACACAAACTCTCTCCCCGGGCTGCGGGCTTTGAAATCGTACGCGGTGCTTTTGATGGGTTGCCGGGGCCGTCCCCTGGTCCAGGTTCCCTTCAGATCACACCACGCGGCAGGAAGCGCGAGCAGCCCCTTTGAGTGACGGTTTCATTACGCTACGGCCGGTGTTTTTCATTTTTCCGCTTTTTATTGCCGCTTTTAAAAACGAGGATAATGAAGAACATGCCTGGGAGCAGAGCGGGGCCAGCGCTAATGGCTCCCAACGCGTCTGCAGCGTCGGGGGTGGGGGGGATGGGAGCTGCGGGGGGAGGCCGGTGACCTCGGATATTTACGTTGATGCTCTAAAAGCGGCCTTTAAAATAAAACAAATGCGCAACAAATCGCCCTCCGGATTAAAGCCTGGGTCGGGTCAGCCCCGGGGTGCGGAGCCATGGGGAGGCGCAGCTTTGGCTGCTGTGATTTTTCAGCTCGCTGAGAGTGTTTGTAGGGTGAAACCGATGCTGGAGGTGCAGCTCCTATCCTTTTGGTGTTTGGGTGAGCCCGGAGCGGGAGCCGCGGATGGGCAGGAAATGCGATTAGGTGGGGAAGGAAACGAATCCAGCTCCAGTTTTATGGCAGATTTCCTGAGCTGCGTCCGGGCGATTTGTGCCGCGCTGCTGCTGGGCGGTGCAGTGCCGGGGAGTGGATCGGAGCTGGGAAAGCAAAGCTGTTGGGGCAGGAGGGCTCTTTGGGGGGGGCACAGGGCTCAGGCACACGAGGTGGGTGGCTGAGGGCTCACCGTGCTGCTCCGATCACGAAGGAGACAACGTCCCTTCTTGGCACTGCAGAGCCTTGGAGGTCCCGCGTCCTTGCTGACAAACCCCTGCCCTTGGGTTGGGTGCCCACGGGGCAGGCTGGGCTTCCTCCTTCTTTTTCTCTTTTCTCCTCCCTCCCCCTGCACGGACCCGGCGTTGTGTCTCATCCAACAGGGATGCAGTCATCCCCAAACAGCTCCGCACGCCCCAAGCATCCCCATCCCCACATGCTTCGCTCCGGCCCAGCTGCAGGGCTCCATCCCTGCACAGGAGGCACTGGGCTGCTTCATCCCTCCCCAGAACACCCAGCATAAGGCAGGACAGCCCTCAGCTCTGTGCCACGGCTCCCCAAAACATTCCCCAGACGGCCCTTTGGGTGCAGCCCAAGCTCACTGAGGTTGGGCTCAGTCCCTCCTGCCTGCCCCTACCCCGGCGAGTGCTCGTTTTCGCTCTGCTGAGAGCAAGGCACCGTTCCCTGGGACTAACGGGCTCTGCACTAATGCTCTTTGTTGCTCGCTTTCTCCCGCGCCTGCCCTGCTGCTTGAGCAAAGCGCCGAACTGGTGGGGATCAGAGAGGCCGGGGGTGACGCAGACAGGGTGATGGATAGCACAGGACCCAGACCTCAGGTTTGGATCCCTCTGGGAGGTGGGGGACCATTTCCACCAAGCTCAAGAAGCAGTGGAGTGGAAATCATTGTCGTGTGACACCAAGCGAGCTTCCTTGCTGGACACTGTTTCTAAATCACTTTTTTATAATGTCAAACAGGGGAGAGACACTTCCAGCAACACGTTATCCTTGAGACGTTTTCTAATGGTAAATATTTTTGTTCTCTCTTTCTCTGTGAAGGGGTCTCGCCTCGAGATGCTCACTGGGGGGGTGAGCTTTGGACTAACTGCATGCCCGCTTTGCACGGCCGCGCTGCCAGCACTAACAGGCACCGCTGCTGCTTGCACGCTGCGCCAGCACACCTTGGGCTGCAACCAGCTCTGCTTTTGGGGATGCACAGAGCAGCAAAGCCCTCCCTGGCTGTGCTTGCATGATGCTGGGCACTCGCCTTGCCTGGGCCGGGGGTGATGGTTTCCTTGTGCCCATCTCTGCAGCTGTGGCTAAGGTGGGAGCGTTGGGTGGGAGCAGTGCTTCAGAACCGCCCCGGTGCTCCGCTCTGTCCTGTTGGGGATCAGAGCCACCTCTTGCAGTGGGGCCGTTACAGGAGGCGTCTGCAGGAGTTGTGCTGCAAGACCAGGGCACCAGGCATTGCTCAGACCGTGCAGGGCTTTCTCCCTGAAGTGTTTGCAGCCTGCACTATGCACCTCTCCCCACGTCCCCTCCTCTCTTTCCTTCCCCATCAGGTGACTGCTGGCAGCACCTGCAGTGACCCCCCTCCCAGGAGCCCTTGTCCCCAGCTCCTGGTGACACATGGCAGCACTCCCTGGCTCTTCCAAGAGGATCCCTTCCCTGAGCCCCACCCCACCAAACCTCACTTTGGGGGCTCTGCAGAACCTTCCCTAGGCTCCTTCTGCAGGCAGCACCAGGGGGACCTTCAGTTTGGTGCTGAGCACACCAGACCCTGGTCACTCCGTGCTTCTCCCCATAAGGCTGTGGGGCTGATGTCCCTCTGCTGCCTCCCGGGAGGTGGAGGCAAACCTGGAGCAGTGCAGGCAGTGGGAGCGCGGGGCACACATGGGGCGCGTTTGGACCCGGTGACAGTCGGTGGCAGTGGAGGACACTGCAGGGGCATTGTTGTGGCACAGTGAGGTTAGGATGGAGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGCAAGCTACTTTGTCTTCTTCCTCCCCAGGCAGTGGGGGCCCTCACCAAATGCTGTGTGTGCAGTGACTCACGCTGGCTTGCAGCTGCCAGCACCGCTGAGCAGTGCTCCTGTCCCAGGGCCACAGCATCCATCCCTGACCCTTCATTTTCAGCTACATCAGAGCCCTGCTTTGCTTACAAAAGCTTTCTGCAAGTTCTGGGATGTGCCTCTTTGCTTTGCAAAGGGCTTTGCTCTGCTGTCCCTGCAGGGCTGAGTCCTGTGCATCCCATGCAAAGCACTCTCTGCAAAGCTCAGCCCTGACGGTGCAAAGGGGATGGATGGCCGGGAAGAAGGGAGCTGTGCTCCTGTTGCTCCAGAAGCGTGGGCTTCACTCTGAGCAGTGACACCATTAACCCATTCCTGTGGGCTCTCCCTGACCGAGCTGCTGCAGCAGAGCTGAGTTAAATTCTTAATGCAGCCTCCAAGAAGTTCCCCTTCCCTTTGGTGCAGCGTTGTCTGCCCTGTGCTCTTTGCTGGTCTGGGGCTGCAGGGTTCATATCTGCAGAAATCCATCCCTCGCCGTAACGTTTTGTAATTGTGCTGGCTATTAATTGCATGAAATGGTCCCTTTGTTCTCCTATTATGGGACATCATAAAAATAGCAGCAACAAGACGAGCACAGAACGATCCCAGCTCCGTCGCCCTGCAGCAAATGGTTGCACGGTTCCGTCACTGGGCCCCATGCAGAGCGCAGCAGAACCTGGGATTTGCTCTTTCCAAGGAATTTCTTCAAGGCATTTTCATGTCGGGTTCCTTGAAGCCTCATTTACCCCTTGCCCGGCCCTCCGAAGGGAAAGGCTTTATTACCCTCTGTGAACAACTTCATGCACTTCAAACCATTGTTCTGGCGGTTAGGACCCAAATTGAAGATTGATGTCACAGGGAAGCTGTCAAGCTGAAAACGCTTCGTTTCAATTAGTGCCCCTTCTGCTTTTACCAGCAACAGCTGACTTTGATAATGCTGGAAGAATTAGCTTTTTTTTTTTTAAGGGATTCTTTTTTCCACTGATGCTGCTGGCATGTATGTGTGTGTATGTATGTATGTGTGTGTGTATGTGTGTGTGTATTCTAATTTTACAAAGCATCTCCCAAATAAGCCTGGGCAGCCGGATGCCCATTGGTGACACGTGAGGACAGCACGGACGTGGGTTGGGCAAGGAGAGCACTGTGAGGCAGGTGGGTGCAACTGATGTGGGGTGAGGGCTGTGCACCTGAGTGCATCTTGCACAGCTGAATGCTGACAGCGCCGTGTGTCCCCCACTGCCTGCAGCCCTGCTCTCGTGGAGGCTCCTGAAGAGTCCAAAAGTGTTCTGTCCTTTGTTTTATGGTGGCAAACCCCCCCCTTCCCCAGCACTGCTCCGTCCATACCTGCGCTGCCCTCGGACAGACAGATGGGGCTGTCCCTGCTCCCATGTCCCACCACAGGGACAGATACCCCTTCTCAAGTGCCGGATGCTGGAAGGCAGGAGGGCCGTGCAGAGGACAGGGCAGTGGGAAACCTGGATGCTTTTCCCTGCCTGCAAGCTGGGATGTGCCACATACACTCACTTTTCACCTCTGGATCCCACCGGGTCCCCTCTCTGTGCTCGAGGGCGTGTGTTAACCGGGAAGCATTAAAAACCCACAGGTGTTTCAGTGGGGCAGGGATTGTGGCCCCCCCCTCCGCCTCCCCTCATCTCCTCACTGCTGTGCTCCTTCCCTCTCCCTGCAG
Seq C2 exon
AGACCTGTGCTGTGAACAACGGGGGCTGTGACAGCAAGTGTCACGACGCGGCCACCGGCGTGCACTGCAGCTGCCCCATGGGCTTCATGCTGCAGCCCGACAGAAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675:ENSGALT00000004215:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]