GgaINT0143484 @ galGal4
Intron Retention
Gene
ENSGALG00000000379 | ITGB3
Description
integrin beta-3 precursor [Source:RefSeq peptide;Acc:NP_989646]
Coordinates
chr27:2302640-2305954:+
Coord C1 exon
chr27:2302640-2302701
Coord A exon
chr27:2302702-2305872
Coord C2 exon
chr27:2305873-2305954
Length
3171 bp
Sequences
Splice sites
5' ss Seq
TAGGTGTGG
5' ss Score
3.08
3' ss Seq
GTTTTGATGTTCCAAGGGAGTAA
3' ss Score
-15.8
Exon sequences
Seq C1 exon
ATGGAGGAACTCCGCGTCGCTTTCAGCATCCTGGTGCTCTGCGCTGCTGGCAGCTGGGGTAG
Seq A exon
GTGTGGGAATGCTGGGTTTGCCCTGACATTGCACGCAGTGCTCGGGTTGCATGCTGTCATCCCTAAGCCCTGGGATTCTCTTCATTCCCACGCTGTCGGGAAAGTCGCACAGAGGGGCAGAGGGCGACCTCAGCACAGATCTCCATTTCTGAGTTTTCCCAATTTTCGGGGCTCCCTGCTCTGTTCTCACTTTGGGCATAGCGATCTCAGCCCTTCTACCCATGCAATGCTTGGCTGTGGTGCTGGTTTGTCGTGGGAGCACTGAGGGGGGCTCTGCAAGCAGGCAGTAAGGGCAGTGCGCAGGGCCAGCAGTTGCCGCATCCATCTCATTTTGGGGGTCAGCATTAATCATTATCCATTTTTCTCCTGTTCTTTTGGTGCTGGTCTTTCAAAGCCCTGATTTCTGGCACCAGAACAAACACAGTTTGCATTGTTCAAAACTTTCCATGCGTTGTGGAGAGGAGCAGCCCAGTGAGGGGAATGTCCTCCCCAGGTGCGTTCCTGAGCTCAAAGCTTCCAGTAAGCAAATCCTGCAGTCACAAAGGGGTGTTGTTCAGCTCCGGGTCTGTAAATCAGCCCCATTGTTTTGGAGGCCCGACCCGAGGGGATTTGGGTCAGCGTTATTTTGGTTAAAGAATGCTGGATTCGGTGTGTTCCCAGGAACAGCCCGAGGCTGGGATGTGCTGAGCCAGCTGTATGGATGCGCTCACCCCTGGGAGAGTCTGAGTTCCGTAGGGCTGCACTTTTGGGGCTGTGCATTTATCCGGTCCCATAACCAGCCTGGGGCATCTCCTCTGCAGAAAGATGCTGGTAGGTGAGGAAATATTCCAAGAAATGACATAGCCCCGGATGAAGTGAGCAAGAGCAGCCAAAAAAAAAGCCAAGCTCCCTATTGCTTAGTCAAGCAGAAAACCCAGAGATGATGTCAAAACAGCTTGTAACTTTACCAAGTTTTCTAAAGCATCCTTATCGAGATTTCTGCATGTGAGCAGGGGGAAAAGCTGGCTCATGCAGCACATGGGGTGTGGGCTGAGGTCTGAGTAATTTTTCCCAGCCAGGGAAGGGGGATGCTCAGCCACAGGCATGGGTTAGGGTTAGGTCGGGGCATTCCGAGTGCATCACTGGGAGTGCGCTGTCTGAACACTCCTTGGCCCCAACGGTGCTTCCCGTGCTGCTCATGTCAGCACCCTACCTTCTATGCGTGGGGATTTCTTTGTTCATTTGAAGGCCCGAGTAATTAGGAGCAGCTCGTTATAGGAAGCCAGCTGTTTTCAGAGTAATGAAAACAAATAAATGCAGCTTTTGTGCTTTGGTTGGTTCGCTTTTATGGCTGGAAAAGTAAAAAGAAACATGACCTAAAAATGAGTGGGAGAAAATATAAATAAGATGCATAGAGTTTATTAGTTTAGGCTGTGCTGGAATCTCACTAACCTGCTCACAGCCAGGCAGCACTGAGGGCTGAGAGCAGGGCGTGCTCAGCCTTCAGCATCCCCTGCTCTCCTCCAGCCCTGGTTTTGCGCCCACAACACCGCAGCATCTTTGCTCCTTGATGTACCCCACTGTGTCCAGCCATGCAAACAAAGCTGGAGATGACAAAATAGGGATATTTCCTAAGGCAGGAGGTGAGGCTGGCCACAATCCCCTTCGTGTTCGCATGGTGATAACAGCCCTATGTTAAGCACTGCTGGCGCCCCGGGGGATTTGGGCTCCTCCCAGTGGGTCAGAGCTGCGTCCAGCTGTGTGTTGAGCACACCAAGAATGGCTCAATACAGTGCTGGAGGATGGGGAAAAGCCCTGCATCCTCAGACACGTGCCCTGGTCATGGGGCGGTGGGGCAGACCACCTGATCTGTGGTCCTGTGTGCCAAAATCAGGCCGAAAATGGGGTTCCCAGCACGGAGGGAGGGTCGTGGGCACCTCTCTTCCTCCCCAACCAAAGGGACACAGCGCTGCTCTGGGATGTCAGTGAGGCACAGGGCTCCCCTGCATCCCGCAGTTCAGAAGCTGCTCCCAACTTTGGGCACACAGCCCCAAGGCTCCCACAGGGGCTTTCTCATTGTGACAAACCGCAGCTGGGGACTTTGGTGTATGCTGAGAGCTCTGGGTGTGGATACAACCCCCAGACTGAGCAAACACGAAATGCTGCAGGGCCGTGTGGCTAAGCATGGTGGCATTCTCTGTGTCCCAGCACTGGTCCCGTGCTCAGCTCCCTGTGCCACCAAGTTCATGCAGGAACACACATCCACACTGCACATCACGCTGCATGCCAGAGGGCACGGACACACCGGTAGCTGTAGCTGTGGCTCTGCTCAAAGCCCAGACCTCTCCGTTCTGCTGTTTCCTCTTTGTGTTTCACAATGTATTTCCTCTCACTTTTGCATAAAACATTGCAGCTGCAAAGGGAGGGCCCTGGGCAGGGAATGGGAGAGCAGGGAATGGGAGAGCAGCAACTCCGCACTGGTACTGGGAGATCCCAGGGCTGCAATAGGGGCACACAGAACCCATAGGGCCCAGCTGCCCCAGGGACGCTGGGGACCACTGTCACTCAAGAGGGAGGAAGAGCTGAGGGTGATAACACCATGGCCATGTCCCCATCCCCTCATTGTATCAGCTGTTGGAACCAGAGAGCCATACAGTTCCCACCTCTGCTCTTCCTGCCCCAGTGGGTGCTGATGGCTTTGGGGCCCCATGAATAGACATGATGTCCTCCAACTGAGGTGTGTGTCTCCCAACATCCTCACTGCCAATTCCACTGGTGGAACTCCAGTTTTACCCAGAGCAGTATCACAAGCAGCTGTCAGCTTCCTTTTGGACAGGAGCCACTTCCCTCCCCTTCTTTCCCAAGACTGGGGCAGGTGGGACAATTTGCTGCACCCGGAGCTCACCACAGCCCCAGAATGCCCACAGAGAGGCACCAGGGATGAAGTGTCCCAGGGCTGCAGGGTCAGGGGCACTGTGAGCAGCTGGCACTGGGCTGGCAGCTGGGAGAGGTCAGCCGAGATGGGCAGGATGGAGCCCAGCTGGTGCTGGGCTGGGGGAGGTTAAAGGAGTAGGGAGGGAGAAATCGGATTTGGGGGTGGGATGGGGGCTTTGCTTGCTGTCTGAGTTCACAGGGCTGTGTGGTGGTGGTTGGCAGGCAGTGACAGCACTCTGTTTTGATGTTCCAAGGGAG
Seq C2 exon
TAACATCTGCGCTACCCGAGGGGTGACCTCCTGCAAGCAGTGCCTGGCCGTCAGCCCCCTCTGTGCATGGTGCTCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000379:ENSGALT00000000519:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0143720=PSI=PU(50.0=89.3),PF0036213=Integrin_beta=PU(7.4=60.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]