GgaINT0144875 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2378070-2378414:-
Coord C1 exon
chr28:2378273-2378414
Coord A exon
chr28:2378205-2378272
Coord C2 exon
chr28:2378070-2378204
Length
68 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAG
5' ss Score
3.14
3' ss Seq
ACCCCCACACACTCTCACAGGTG
3' ss Score
7.19
Exon sequences
Seq C1 exon
CGTGCTCACCGACCTGCAGGCTGTCCATCAGAACATGGGGTACTGCCCGCAGTTTGATGCCATCACGGAGCTGCTGACGGGAAGGGAGCATCTGCAGTTCTACAGCCGTCTGCGTGGGGTGCCGGAGGAGGAGACCCCCAGG
Seq A exon
GTACAGCCCACGCCCCGGCCTCCCCCCAGCCCCTCCGGCCCCATGCTCACCCCCACACACTCTCACAG
Seq C2 exon
GTGGCTCAGTGGGGCATTGCCAAGCTGGGTTTGGGACCACATGCAGACCGCCTGGCAGGCACATATAGTGGGGGCAACAAGCGTAAGCTGTCCACGGCCATCGCCCTGCTCGGCAGCCCCCCCATCATCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATGCCATCACGGAGCTG
R:
GTTGCCCCCACTATATGTGCC
Band lengths:
168-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]