GgaINT0144875 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2824171-2824515:-
Coord C1 exon
chr28:2824374-2824515
Coord A exon
chr28:2824306-2824373
Coord C2 exon
chr28:2824171-2824305
Length
68 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAG
5' ss Score
3.14
3' ss Seq
ACCCCCACACACTCTCACAGGTG
3' ss Score
7.19
Exon sequences
Seq C1 exon
CGTGCTCACCGACCTGCAGGCTGTCCATCAGAACATGGGGTACTGCCCGCAGTTTGATGCCATCACGGAGCTGCTGACGGGAAGGGAGCATCTGCAGTTCTACAGCCGTCTGCGTGGGGTGCCGGAGGAGGAGACCCCCAGG
Seq A exon
GTACAGCCCACGCCCCGGCCTCCCCCCAGCCCCTCCGGCCCCATGCTCACCCCCACACACTCTCACAG
Seq C2 exon
GTGGCTCAGTGGGGCATTGCCAAGCTGGGTTTGGGACCACATGCAGACCGCCTGGCAGGCACATATAGTGGGGGCAACAAGCGTAAGCTGTCCACGGCCATCGCCCTGCTCGGCAGCCCCCCCATCATCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATGCCATCACGGAGCTG
R:
GTTGCCCCCACTATATGTGCC
Band lengths:
168-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]