DreINT0023703 @ danRer10
Intron Retention
Gene
ENSDARG00000062661 | abca4b
Description
ATP-binding cassette, sub-family A (ABC1), member 4b [Source:ZFIN;Acc:ZDB-GENE-050517-4]
Coordinates
chr2:15617865-15620933:+
Coord C1 exon
chr2:15617865-15618006
Coord A exon
chr2:15618007-15620798
Coord C2 exon
chr2:15620799-15620933
Length
2792 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
ATTACGTATGTTTTGTGCAGGTG
3' ss Score
7.94
Exon sequences
Seq C1 exon
CATTCTTTCCAACATCCTGGATGTGCACCAGAACATGGGCTATTGTCCTCAGTTTGATGCCATAGATGAGTTGCTGACGGGTAGGGAACACCTGTACCTTTATGCTCGCCTTCGTGGGATCCCTGAGTCTGAGATTAGCAGA
Seq A exon
GTAAGAGTTTCAACCCTTCAGTAACTTCATTTACATCTTATGCCTTTGCATCTCTAAACCCCCACTCTTAAATTATGTTCCTCTTCAAATCTGTGACATCACCCTGGCTTTGTTTCCATCCAAAAATGTCAATTAGATTTAGGCACAAAACTGGAAATATCTCAAATATCATTCGCAAATAAAGAATCGTTTTGATAAAAAAAAAATAAATCATGACTTCCTGAAAAATTGGTGCCAAAAGATGAAAACACTTTATTTTGATGGTCCATTTGAGTATTAGCAGACTGTCTGCTTAATATCAGTTGATACTGCTCCTTCAACAGACATTTAAGTGAAGTTTATTTGAAGAACTAATTTTTAGAGGAGCACGCGCTTATGATTGATAGCAGCTGGTCCACATTAGCTTACACTGATTTACCAATCAGACGACTGCTTAACCACTATAAATAACCAGAGCATCTTACCTCAGCCATCTTCATCTTGGAGAATCCCCCCTTCCACCCCTACTCCTCCAAATTTTTTGTCAGGGCAGCACGGAGGCCTAATGGATAGCATCATTGCCACACAGCAAGAATCAAGCTCAGACACTACCTGTTGGAATTTCTGTGCGGAGTTTGCATGTTCTCCCTGTGTTTTCACCGGGCTCTCCCGTTTCCTCCCACAGACCAAAAACATGTAATGTAAGTAAACTGATAAATCTAAATTGACAGCATAGACACTCCATAGCATTTATTATTTACTTTCAACATCATCAAGCAGGGGGAGTTCTCGAGACCTACCTGGACTCCCCTCTCATGCTGCAATGGGGGGGAGCCCCGTGCTCGAGGATCTCACGAGCTCTCTCCCGGGACAGCATGCCAAACACGCTTCATAATCAATCATCAGCTAAGAGCGCACTCTTGAACTGACTATTAGAAACTTTGCAAGTACATGTCAACTAACCCTAACCCCAACCTAACACGCTACTTATAATCTAATGAGAATTAGTTGGCATGTACATGCAGTGTAACTTAAATTCAACAAATGGACCATCAAAATAAACTGTGATGCAAAAAAAAAAAAAGAAAGAAATTTGCTGTGGTAGGAGAAGCTAGTGCTTTTTAATTATTTTTTAAAATAAATTACTCACACCTCAAAATACAAAGACAAAAAGCAATAAATGAGCAGTGGCTTTTGGAGAAGTGAGACCATTCTTAGGCTATAATTCCAAACCACTTTGCTGACGGACTTTGGCTAAGAGATTTTAGAGTGACCAAAACAACATTTCAGATGTTGTGCTATGTGGTCTGTCCGTTGGTTTTTCATTAATGTTGTCCCATCGAGCTCATTTTTAGCATTTCGAGCGCATTTCTTTTTTGATGTGCATGCTGGAATTTATTTGGTAAGTGTTCCTATTGTAGTTTATGTGCAGTTTTTTTGATGGAATAAAAAGTTTAGTCTACTCAATTGTGTGCATAAGTTGTATGGCATTTTCAGCCTGATTTCACAAGAAAATTTAACTATTTTGTTGAGTCATACGAAAATGTACCATTTTAAAAAGGAAGTTTGGCACCCAACACTGTCCCTAAACACAATCATCACATCATTGGGGGATAGGCAAATCGTACTAATTTGTACGAATGAGATTGTATGAATTCATACGAATTAGCAGGGCCAGACTATTTCTATTACTATTACTATTTTTGCTATTTCTGCAGAGAATTTTGATAAAAATCTGCGAATTTCTGTGGAACTATTTTGGAAGTATCATGACTAAAACCTTAATTAATGAAATAAAAATTAATACCTTTTTAACTTTTATATAATGTTTAAATTGCAAATCTAATTAGATTCACTTTATTTGGTTAACAAAGCAAGTCTCTCATATCATATATCTAGTAAAAGACAAAAAATATTACTGTACAAACTGCACTGTACATAAATCAGATGAACATTTTCATATTAGTCAGTAATATTTATGTAATTAAATAAAAAACTAAACTAATTTAGATTTACACATTTACTCAAATAAATAAACAGAATTAATGATTAATCTGCGGAATTCTGCGTGCAGATTCCGTATGGGCTTACGAATTAGCCACTAAATCAAAAAGGTACAAATTGCCGTGAATTTGTGTTGGCATTTCCATTACGCACATTCTTATGTTATATTCTAAAATGCACATAAAACTAGATGGACGAAAACCTAGCTAAAGATTTAAACAAACCTTAAAACATTATGTATGAGTTTCTTAACATTGGCTTTCATTTGTTGTCTTGTATATGTACAGTATAATGATTTTAAAATGATTAGGTACAGTAAGATGATGCGAAAATAGCAGAGTCTTCTGTTGACTTTTGTTGTTTGCTCATTGATCAGATTGATATGCTTCACCAACACAATCTCATGGTGAATATTTTATGGTAGATTACTAACTGATTCCTAATTATGAGTCTCATGTATAAGTTTTCTTACAATCTGTTGACGCCTCAGACAGTGACAGTTAAGTTTAGAAGTAGACCTTCATGCTTTCTGTAATTAAACCTTTTTACATGAATGAGACAATACTAATATGAATTAGACAACAACTTGCATAAACACGAAACAGTGAGATTTCACCTCAAGATGACTGTGTAGTCTTAGCAGCAGGCTGATGCCAGTTCAACAAGTTCAATCAGCCAATGTCAATGTGCAATGAGCAATGTGTTCTTGTTGCATGTCTGGTCTTTTGTTTACTTCAGTAATCTGCAGTCTTTTTAAAACTATAATTCTCAAACAATGCTGTCTCATTAATTACGTATGTTTTGTGCAG
Seq C2 exon
GTGGCAGAGTGGGGCATTCAGAAGCTGGGTCTTTCTGAATATGCAGGAAACTGTGCTGGTACCTACAGCGGGGGCAACAAAAGGAAGCTGTCTACTGCTATAGCGATGATTGGATGTCCTCCTCTGGTGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062661:ENSDART00000144171:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]