HsaINT0000818 @ hg19
Intron Retention
Gene
ENSG00000064687 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:37]
Coordinates
chr19:1062171-1063677:+
Coord C1 exon
chr19:1062171-1062312
Coord A exon
chr19:1062313-1063542
Coord C2 exon
chr19:1063543-1063677
Length
1230 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACTCTGGCCCCACCCCACAGACC
3' ss Score
8.83
Exon sequences
Seq C1 exon
CGTGGCCCGGGAACCCAGTGCTGCGCACCTCAGCATGGGATACTGCCCTCAATCCGATGCCATCTTTGAGCTGCTGACGGGCCGCGAGCACCTGGAGCTGCTTGCGCGCCTGCGCGGTGTCCCGGAGGCCCAGGTTGCCCAG
Seq A exon
GTGAGCCCACTTTGTCCCCACCGCTCTCACCTCCCAGGGCCCACCCGACCCAGGCCGTGCCTCTAAAGCCTGGCCCAATCCCGCACTCTCTCGCCTTGGCTCCATCCCTGTCCCTGCCCCCAGACCGTGCTTCCTTCCCCTATACCTCTGTCCCCCATCCTGGTCCAATAGGGATGTGGCTAGCCCGCCTCTTTGCCCCGCAACACCAAGTTCCACCATTCTCATTGGTCCACCCACCCTTCCTTCCGCTGCACGTTGCCCCTCTCTCCTTGACTCTGCCTTCTGTGGCCCTGCCCACTTGCTCCTCTTCTGCCTACCCCCTAGGGCTTCGCGCCTTTCTCGCTGGGGTCACGGTCACATTCTCACTCTGGCCGTTCCCAGTTTGCAGCCGTTTCACTGCCTCTTCCATCTGCTTGGGGGTCTTGTCTTTGCCCTGGCCCGCCCCACCCTCACACTGTCCCACCCCATGCCCTTTCTGGCCCTGCCTCATACCCATGTTGGCTCCACCCACACCATGGCCCTGCTCCATACCCATCCCAGCTCCACCCATACCAAGGCCCCACCCCATACTCATGCTGGCTCCACCCACACCATGGCCCCGCCCCATACTCATGCTGGCTCCACCCACACCATGGCCCCGCCCCATACTCATGCTGGCTCCACCCACACCATGGCCCCGCCCCATACTCATGCTGGCTCCACCCACACCATGGCCCCACCCCATACTCATGCTGTCTCCACCCACACCATGGCCCTGCCCCATACTCATGCTGGCTCTACCCACACCATGGCCCCGCCGCATACTCATGCTGGCTCCACCAGTGTGGCCCCGCCCCATACTCATGCTGGCTCCACCCACACCATGGCCCCGCCCCATACTCATGCTGGCTCCACCAGTGTGGCCCCGCCCCATACTCATGCTGTCTCCACCCACACCATGGCCCCGCCCCATACTCATGCTGGCTCCACCCACACTATGGCCCTGCCCCACACCCATCCCAGCTCCACCCACACCATGGCCCCGCCCCATACTCATGCTGGCTCCACCCACACCATGGCCCCGCCCCATACTCATGCTGCCCCCACCACACTATGTCCCATTCTCACATTTGCCCTGCCCCATGCCCATTATGCCCCTGCTCCACACTCAATGCTGGCCCCGCCACACTGTGGCCCTGCCCCATACTCATCAATATGAGTCCCCATGCCTACTCTGGCCCCACCCCACAG
Seq C2 exon
ACCGCTGGCTCGGGCCTGGCGCGTCTGGGACTCTCATGGTACGCAGACCGGCCTGCAGGCACCTACAGCGGAGGGAACAAACGCAAGCTGGCGACGGCCCTGGCGCTGGTTGGGGACCCAGCCGTGGTGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687-ABCA7:NM_019112:42
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACCTCAGCATGGGATAC
R:
CAGAAACACCACGGCTGGG
Band lengths:
254-1484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)