GgaINT1002770 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8203113-8205387:-
Coord C1 exon
chr18:8205116-8205387
Coord A exon
chr18:8203223-8205115
Coord C2 exon
chr18:8203113-8203222
Length
1893 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTGTTTTTTTTTTTTCTAGGTA
3' ss Score
12.24
Exon sequences
Seq C1 exon
TGAAATCTGCCTGGGCAACTCCACAACAATGTGCTCTGTTTGCTTTTTATAACGTAAATAAATCTGAAGCTCTGCCAAAGAGGAAGGGGGGGAGCGAGGGATTGCGTGAGGAATGCCTTTTGGCACAAATGTCCCTGTGAAGGAGTGGTTGTGCGAAGAGAAGGGCTCCGAGCAGCACTGCAACCACTGGCCAGAGTCTCCCCGGCAGCCCCACGTCCAGGGGCGCATTGCACAGAGCGAGCTTTGGATCCCTGTCAAACCCTCCCATTAAG
Seq A exon
GTAAGGCTCCAGCATTCTTCTTAAAACAAGAGAAAAATGGTATTTCAGAGAGATGAAAGCACTCAGTAGTTAAGCATAAATAACGGTGGGTGAACACGGATGCAGGGAGATGGGTCCATGGGCGTCTTGGGAACAGGCTTGGTTAAGACTGGGATTAAACTTATTAGCGCTGTCAGCATAACAGGCATTTTAACCTCCATTTGATATAGAGCAAATGGAGCTCCGTTTGCAGCAGAGGTGCGTTTCTGGCAGTTCTTTTTGCTATGAGGATGTGGTATGATTCAGCTGCATTCAGTATTTTAGGGCATCCAAGGCACTTAGGAGCAGAGTAAGCTAAAGATGGAATTTGAAAAAAAAATCGTCTTTCATCCTTAAAAATTCCCCCTGAGATTGAGTGGGAACAGGCACAGCTGGGGGTGATGCGGAGGGGACACTTGAGACATCTGCAATGGGACCTGGTGGCCAGCTCTTCATCCCACTGCAATCTCCTGGGTGTGAAGCTGGAACTCTGGCTGTGTGTCAGCTTGTCTGAGTGTAGGTTGGCTTCACCATTTCAAGGAAGCCTAGAGATCATCATAGCAAGCTGAATTCATGTTTTTATATGCTTTGTGAGGGCTTCTGTAGGAGAGGAATCCATTAGGAATGTGATGGTCAAATAGTAGATTCCTGTCCCTACCCTTCCGAAGTGTCCCACAGAGGTAGTACCATTCGTTGCAGCTTTTTGAGTGTTTGGTGTCATTGTGTCACCCCAGCAGAGCATGGTCAGTCCTTGGACTGGGCACTCACATCCCTGAAATTGGCTGATATTGAACATCCATGCGAGTGAAGCGGAGAATAATAAGAGAGGGGGCAATGTGAATATAAACATTTGAAGAAGATAAGCACTTTGAGGCATAATTCCCCAAAGTGTATGGGACAGGATACACTTTCCTCTGTATGACTGGGAGCTTTGGAAAGGTTCAGTCTCTATGTGCTCTCAGAGTTCCACCTGAGACTTTGTGTACCGAAGATCAAGGAACCGTTGTCTGGAAGTGTACTTGAGCAGCAGAGAAGTTTTGCTGTGGGAGTTTGGTTTCTCTTTCACATTTGGGTGCTTTGTCCTTTCACTCACTTCAGTTACCCATGGCTATTTTCCTGATGGTTAACATGGACACATCTCATCTGCCGTGTTCCTCTGACAACATACGCTCTGCCTAGCTTTTTTAAGGCTCAATACGAGCATTGGTTGTCTTCCAGGAAACAAATCACTGTTTTGCTTTGACCACAGATTCGAGGATGTTGCAAGATTGTATGGAGTAACTCACCACTGCACACTCGTGGTTGTTTTTTCTCTCTTGTTCCCCATGAAGAGCTCCGACAACGCAGCTCTCTGAATGCACTTCCAAGAATTTGTTCTCTCGTAGCTCCCAGTTGCCTTCAGTTGATTCTGTTTTCTGTCTGAGCTCAGCTTGTACTATGGCCAAGAGTTTCTCAACGCTTGGTGTGAAGCCTACAGCATGTTAAAATCACATGCAACTAGAATCTGTTGATTTTACTTGACTATGTTTTTGTCATTTCTTGGATATTCATGCCACCCAAACCAATTAGTCTGATTTCCCTTTTGTATTACGGAGTTAACTCCTCCCAGACTTACTGTGCTAAAGCATGGAAGCATGAAATCTGGATTACAATCGGTGTCATATTGCTGAGCTGCAAGGATGAGGAACACACTGATGACAACGATGGCCTCTGGTGTAGGACAGAGTCAGGGACCAAATGGCTTCAGCTCCTTCTCAGGAAAAGGAGAGAGTGTTTCTGGCAGACATGCAAATGCTGTGCAAATAAAAGCAGTCACTGATGTTTTAGCGTTGCTGTATCTGAAAGCAATTAGTTTTTTGTTTTTTTTTTTTCTAG
Seq C2 exon
GTACAAAGATGAGGAGACCTAAGAGAAATCTGAGTGTGTTCCAGCAAACTAAAATTCTCTTGTGGAAAAATGTGCTTATCAAATGGAGGATGAAAATGCAGAGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCAACTCCACAACAAT
R:
TCATCCTCCATTTGATAAGCACA
Band lengths:
356-2249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]