HsaINT0000828 @ hg19
Intron Retention
Gene
ENSG00000141338 | ABCA8
Description
ATP-binding cassette, sub-family A (ABC1), member 8 [Source:HGNC Symbol;Acc:38]
Coordinates
chr17:66938080-66951533:-
Coord C1 exon
chr17:66951360-66951533
Coord A exon
chr17:66938181-66951359
Coord C2 exon
chr17:66938080-66938180
Length
13179 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTTCTTTTTCATTAAACAAGACA
3' ss Score
1.67
Exon sequences
Seq C1 exon
ATAACCTCCACTCTGAAAGCAGTCTTCACAGAAACTTTTCACAGAAGTCAAATAGTTAAAGCAAATTCTAGATACATGGTAGAGACCAGGAGAAAATATGAATAACTTTCTTCTAAACAAGGAGCTCAGTGGATAAACCATACCTCTAGATTCCTTGCTTCCATTTTCCCAGAA
Seq A exon
GTAAGTTCACTGTATTTTTTCTGTTTTGTTTTGTATTTTGCTTTTGTGTGTGAGTTTGTTTCAGAGGTTTTGTCTTTTCTTATTCCTATCACAAAATTATAAATAAACCTTTATAAACTGAATGACAATCATCTATGCAGAAATTATTTTGAAAAATATTGGGCTACTTTAAAGATTTTATATCTGGTAATTAATATTAGATAAATAAAAACATTGAGTTAGAATGTTTTTTAAAAAATTATGCAAACATTATGTTGTTTTAAACATAACTGAGTGTAGAAATAAGTTTAAATTGGCTAAAAATTTTTTGTGAAGAGCTTAGAGTTTTAAGAATTGGGTTGGAAGACTGAGTTGTTTTTGAAGTTAAAGTTATCTACTTTGATTGCACAATAATGTAGGGCATTTTGGATAAGTGTTCTTCTGACTTTAAGACTGTTTACCAAGAGCACTTACAGAAATATTTTTATTGTTCCTATCGCTCACTCTTAGTCTATAAGAATTTTAGAAATGTAAGATTCTTTCTAGGATCTTTTACTCGTTGGATACAGTGAGTTGAATCAGAATGTGAAATATGTAGCTTCTCTTTACCACAATGTTATTTAAAATGTACATTGGTAAAAAGAATTTTCATACTCCTATAGTGAATACATGTTGTTCTGAATTTTACAACAGTATAAGAGGATAAAAATGAGTCATTACAATTTGAGACTATTTGCCATATGTATAATAAAGTATTCATGTTTTTGCTAGCCTTTACATAAACTGCAGAACATACAAAAATTGGAAAGAAACAAAGTTGGCAATAATACTTTACGATGGAAGATATAAGGGATTGGAGTCAGACTGGAGTTTGCATGCTACCTAAGACTGTAGCTGATTCCATAGTGAGGAGATCATCCTCTTGGCCAATGTCTATTAACTTCGCCAGTGAATTATGCATTTCTGTAGAGAAGCTGTGATATATTTGGGCTTGTGCATGAGGTGGAGTGTAGGGAAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCGTGGCACATGTATACATATGTAACTAACCTGCACAATGTGTACATGTACCCTAAAACTTAAAGTATAATAATAAAACGAAAAAAAAAAAAGAAATTCCTCCTGTACAGAGCTTGCATTGGCGGCAGCTGCTTTAAGAACCCAGAAACTTTTGCCCTCTCTGTAGGCTAGCTCACTGTGAAAATATCCCATGGATTTTACCTAAAATTGCTTACAGAGAGCGGCATTATACTTCTATAGATAATTGCATCAGTAACCAGAGAGGAGAAGTACAGCAGCAGACTACCCTCTACCCCCGGTAGGAGTAGTAGCACATCACAGTTTCAGCAAGTTCAATCTTGAGCAAAGAACATGATGTGATTGTTTGTGGGTATGTCTGTATACGGAGTGTGATTTTAGGTAAGGAGAGCCTTGCACAGCTCTCTTAAAAGTATCCATGCTGAATTTTCTGCACCTTAACCTAGGCTGCTTTACTCTTGGAACTGTCTTTCCCTCTTCTCCTTCCATGGGCTCTCTGACCTCTTTACTTGGTCTGCTTCCACTTAGGCCTGCCCCTCAGCCTCATTGCATGGCCATGTGTAGGTTCTTCTTCTAGCAGTGTTCTCTGAGACTGCTGTGGCTAATGTGCCTTCTGTTGCAACTGACCCCTGGACACCTTACTTGAGATTTGGCTCTAGAAAGTAGCACCACCCTGTGTGTGATCCTGTCCCATAAATGAGATGATGGCTTCAGTTGGGGCTCATTCACTTCTCATCACTATGGAGGAGTTCATAGAAACTGCATGGCCAACATGGCATGCATACGGAGGGAGATCACTTGCTTCAGAAGTCAGGACTTATGAGCCAAATGATGGTCTTCAGGGTGGAGCTGCTGGCTTTGTGCTCAAAAGTCTGGACCCATTCTTCCAAGTCATGTCCTTCACATGCTTCCCAGAAAACTGATGATGGTACCTTCCAGAATCTCTTTACTTTCTATAATTCAGCTTAGGTAGCCTGTTTTCTCCCACGGCAAAGACCATTTGAAAGCACTCTAGTCCTACAGTTTTCAGGAGTGGCTTAGCAAATCCTATTTGTGTAGCAGTGGTTGATTGAAGTTCTGGAAAGATGTGGTGCTCTTATTATGCACTGAATTATCTTCTTCTGGGAAGTATTTTATGTGCCTGCTGCAATAAACTGTATGTATAAATTCCCCTACAAAATCACCCCCCATATACAGACATACCCAGAAACAATCACATCATGTTCTTTGCTCAAGATTGAACATGCTGAAACTGTGATGTGCTACTACTCCTACCAGGGGGTAGAGGGTAGTCTACTGCTGTACTTCTCCTCTCTGGTTACTGATGCAGTTATCTATAGAAGTATAATGCCACTCTCTGTAAGCAATTTTAGGTAAAATCCATGGGATATTTTCACAGTGAGCTAGCCTACAGAGAGGACAAAAGTTTCTGGGTTCTTAAAGCAGCTGCCGCCAATGCAAGCCCTGTACAGGAGGAATTTCTACACTCCACCTCCTGCACAAGCCCAAGTATATCAAAGCCTCGCTACAGAAATGCATAATTCATTGGCAAAGTTAATAGACATTTGATGGTAAAAAATGAATCTACTTTGTATGTTCTTTAAATTGAAAATTGAATCACATTTCTACACAACAACAGGCGGATCACAAGGTCAGGAGATCGAGACCATCCGAGCTAACAAGGTGAAACCCCATCTCTACTAAAAACACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCTTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAATAAATAAATAAATAAATAACCAGGATAATTAGATTGGAATTCAGCAGAGTGTTAAAATAACTAGAAGGCATTTGTTTGTAAAAAGAGAACAGAGATAATAAATACTTTTGAGTTTTCATAAAATAAGTTATAGTTTCTTAGAAAAGTATTTAAGAGTAACCATAAAAGACATATAACCACCTTTTACATCTTTGGGACAGGAGAAGAAGTGAAGAAGGAGAGGAAAACATTTTCAATTCAATAGAAGGTAAAGATGTAGACAAAACTAGAAGCAAAAGAAAAGTAGGTTTAACGTGAGAATAAGATAGAATGAGAGATCATCCAAAACAAAAATTCATACATGGTTTAATGCATCTCTTAAAATATAGTTATCTATCAGTTTAGATTTCTAAACATAATGCATTGATAGTTTTTTATATAGTAACCAAATATTTAAAAATGCAGCAAAAGGTTAACAACAAAGAGATAGAAACAGATACATTAGGCAAATATTAACCTACAGAAACCTAGTGTCTCCATATTATCAGAAATAGAAGCAACCTATTACTGAAACATAAAAAAGCAATGTTTTATGCACCTAGCTACCTATGCTTTAAATGCACTTGCTGAAAACTAACAGAGATATAATAAGAAATTGCCAAACCTATTATTAGAGTGGAAATTTTTAATTGAACTCTATTATGAAATGATTGATCTAGGAAATATAACATTAGAAAGGATGCTGAAGATTTGAAGAACACAATGAAAAAGATTGAATAGATACGTACAAAACACTTCACCTAAATGGTGAGTTACAGGTATGTTAGGTGCACGTGGAACACTTTCAAATATTAAAATATGCTGCACCAGCGAGGAAGTCTTAAGGAATTTTAAAGAAGCAGTATCTTACTGAGAAGTCATTTCTTTGGTCACAATATAATTGTTAGAAATCAAAAATAAAAAGTCACTAAAAACAAAGAAACTTCAATATAGTGAATGCTAAAGAGGTAATCCTAAGTAACATATGTATGGTCTATTGCCACATTTATGTTACATAGCAAAAAGGAAATAAACCCAAATAACAACACACAGCAATAAGCATTTGTAGTGTGGTGTCTGCAGTGGTTCCTAAGAAACTGCTGATCTTGGATAGGCTTGATGGTATCTCTGGGAGGGGACTGGCTAGCACTCTCAACTGGATGACTGAGAGGACTCAGCTTGGTTTCATTCCGCAGTAGGCTAGGCCAGGTCTGCTCTCACAGCAATGGAAGAAACAAAAAAACAAGCAGATACACTCAAGGTCTCGGGAGGCTGAGGTTCAGAACTGGTGCGACATCACACCTCCCTTCTTCTCTTGGCCCAAGTACTAGCCTGCCTTGATGACAAAAACTCCAAAATTACCAGACAAAGGGTGGACACAGACAGATGGATAATTGGGTCACTGATGCAATCAATCACTCAACTCCAGAATCCATTTTCTCAGCCACTCTGCTAACATTAGTTCGTTATTTCAGCCAAGAAGCCAAAGGAAAAAGTAGCAAAACCAACCCCCAAAAAGAGTAGAAATAAAACCGTGAAAAGTAAGAGGATAAATTAATAAATTAGAAAACATAGTAAGCAATGAAAATGATGAAACAGTAAACTGCTGTTTTGTTTAAAAGGCCATTAATACATTCAAAATTCTAGCAAGACTAATGAATAAAAATAAAAAGAAGCTTAAAAATAGAAGAAAACATACATCCATTTATAATAGGTTTTCAAAAGTATTTTTAGTTATAGATATTTTAAATTCATGCTAATAAATCTAAATATAGTTTGAAGCCAGGTAGCAGGATGCCTCCAGCTTTGTTCTTTTTGCTTAGGATTGTTTTGGCTACGCGGGCTCTTTTTTGGTTCCACATAAAATTTAAAGTAGTTTTTTTCTATTCTGCAAAGAAAGTCAATGGTAGCTTGATGGGAATAGCATTGAATTTATAAATTACTTCGGGCAGTATGGCCATTTTCATGATATTGATTCTTCCTATCTATGAGCACGAAATGTTTTTCCATTTGTTTGTGTCCTTTCTTATTTCCTTGAGCAGTGGACGGCTTTTTGCTTGTCTATTGTTGGTGTATAGGAATGCTTGTGATTTTTGCACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCCTACCAGCTTAAGGAGTTTTGGGGCTGAGACTATGGGGTTTTCTAAATATAGAATCGTGTCATCAGCAAACAGTGACAATTTGACTTCCTCTCTTCCTATTTGAATACCTTTATTTCTTTCTCTTGCCTGATTGCACTGGCCAGAACTTCCAATACTATGTTGAATAGGAGTGGTGAGAGAGGGCATCCTTGCCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGCTTTTACCCATTCAGTATGATATTGGCTATGGCTCTGCAGTAAAGAGCTCTTGTTATTTTGAGATATGTTCCATCAATGCCTAGTTTATTGAGAGGTTTTAACATGAAGGGATGTTGAATTTTATGAAAGGCCATTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCATTGGTTCTGTTTATGTGATGGATTACATTTATTGATTTGCATATATTGAAATAGCCTTGCATCCCAGGGATGAAGCGACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTTGGTTTGCCAGTATTTTATTGACGATTTTCACATCGATATTAATCAGGGATATTGGCCTGAAATTTTCCTTTTTTGTTGTGTCTCTGCCAGGTTTTGGTAGCAGGATGATGTTGGCCTCATAATGTGAGTTAGAGAGGAGTCCCTCTTTTTCGACTGTTTGGAATTGTTTCAGAAGGAATGCTACCAGCTCCTCTTGTACCACTGGTAGAATTCAGCTGTGAATCTGTCTGGTCCTGGGCTTTTTTTGATTGGTAAGCTATTAATTACTCCTTCAATCTCAGAACTTGTTATCAGCCTATTCAGGGATTTGACTTTTTCCTGGTTTAGTCTTAGGAGGGTGTATGTGTCATGGAATTTATCCATTTCTTCTAGATTTTCTAGTTTACCATGCTAACTGACTTCAAACAACACTAGGAGGCTACAGTAACCAAAACACCATGATACTGGTGCCAAAACAGATATATAGACCAATGAAACAGGACAGAGACCTCAGAAATTACACCACGCATCTACAACCATCTGATCTTTGACAAACCTGACAAAAACAAACAATGTGGAAAGGATTCCCTGTTAAATAAATGGTGCTGGGAAAGCTGGTTAGTCATATGCAGAAAACTGAAACTGGACCCCTTCCTTACACCTTATACAAAAATTAACTCAAAATGTTTTAAAGACTTAAATGTAAAACCCAAAACCATAAAAACCCTAGAAAAAAACCTAGGCAGTACCATTCAGGACATAGGCATGGGCAAAGACTTCATGACTAAAATACCAAAAGCAATTGCAACAAAAGCCAAAATTGACAAATGGGATCTCATTAAACTAAAGAGCGTCTGCACAGCAAAATAAACTATCATCAGCGTGAACAGGCAACCTACAGAATGGGAGAAAATTTTTGCAATCTACCCATCTGACAAAGGGCTAATGTCTAGAATCTACAAGGAAATTAAACAAATTTACAAGAAAAAAACAATCCCATCAAAAAGTGGACACAAAATATGAACAGACACTTCTCAAAAGAAGACATTTATGTGGCCAACAAACAAATAAAAAAAACTCATCACCACTGATCACTAGAGAAATGCAAATCAAAACCACAATGAGATATCATTTCATGCCAGTCAGAATGGCGATTATTAAAAAGTCAGGAAACAATAGATGCTGACAAGACTGTAAAGAAATAGGAACACTTTTATACTGTTAGTGGGAGTGTAAATTAGTTCAACCATTGTGGAAGACAGTGTGGCGATTCCTCAGGATCTAGGATCAGAAATACAATTTGACCCAGCAATCCCATTACTGGGTATATACCCAAAGGAATATAAATCATTCTACTATAAAGACACTTGCACACATAATGTTTATTGCAGCACTATTTACAATAGCAAAGACTTGGAACCAACCCAAATGCCCAACAATGTTAGACTGGCTAAAGAAAGTGTGGCACATATACACCATGGAATACTATGCAGCCATGAAAAAGAATGAGATCATGTCCTTTGCAGGGACATGGATGAAGCTGGAAGCCATCATTCTCAGCAAACTAACACAGGAAAAGAAAACCAAACACCACATGTTCTTACTCGTAAGTGGGAGTTGAACAATGAGAACACATGGACACATCAAGGGGAACAATGCACACCAGGGCCTGTTGAGGGGTAGAGGGCAAGGGGATGAAGGGCATTAGAACAAATACCTAATGCGTGCGGGGCTTAAAACCTAGATGACGGGTTGATAGGTGCAGCAAACCACCATGGTTACATGTATACCTATGTAACAAAACTGCACATTCTGCACATGATCCCAGAACATGAAGTAAAATAAAAATAAATAAATAAATAAATAATCTAAATATAATGAATACTTTTCAGTGAAAATTATCAAAATTGGATCAAGTTGAAACAGACAACTTGAATAGACCAGTCATATTTAATTAATTGAACCTTCGTTAACAGCAATGATAATTTAGCCCATCCTTATCCCAGAAACAACAGGCTCATAAGGTTTTATCAGCAAGTTTACTAGCCTTCTAAGATCAGATCTTCCATGTGTTACAAACTGCCCTGGAGAACAGAAAAAGAGAAAATGCTAGCCATAATAAAGCTAACATAACACTGAGGCTAAAAGCAGACAAGCACATTGTATAAACAATTAAATTATAGTACACTGTAACTTATGATTATACACAATCCCAAGTAAAATATTGGCAAATTCAATTAAGTAGTATTTAAAAATACCTTATGACAAATTATAGTATTTGCTGGAAAACATGAGAGAAAACATCAATCTAATTTACATGTTAGTAGATTATATTAGATATAATCATAATCACAAAAGAACATAAGAAAATATCTAATGTCCATGTAGAAGAAAACTCAATACCATAAACATTTTAATTATATCTGAATGAATCAATAAATTTAATGCAATAGTAATCAGACCTTTATTTATCATGAAACTTGTCAAAATGTTTCCAATATGCATTTAGAAGAGTATAAGTAGCTAATATAAATTGAACTGTAGAATAAATCTAACAAAAATTATTTAATGGCTCAACTACAATACAATTTATTTTCTTTCTTTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTTTCTTTTGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCCATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCCCCTGCCTCAGCCTCGTGAGTGGCGGGGATTGAAGGTGCATGCCACCATGCCCAGCTAATTTTTTTGTATTTTTAGTAGGGACAGGGTTTCACCATGTTGCGCAGGCTGGTATCAAACTCCTGAGCTCAGGTTATCCGCCTGCCTCAGCCTCCCAAACTGCTGGGATTACAGGCATGAGCCACCATGCCCGGCCAATACAATATAATTTCTTGCTCATTAAACTAATATATCAGTTTATCTTCCCATGATAATCTAGGAAACTGAATTCCATCCGTCTTTTGGCCGGCTGTCTTCTAAGGCATCTACCTATCAGAAGGGAAAAGAGGATATAGAGAGACTCACCTACTTCCTAATATCATGACTTAGAAATGGCACATTATTTCTTCTGCATATATTCCATTGACTAGGAAGCAATCTTATGTCATTGTGAATGGAGTATAGCTCTGTGCTCAGAAAGAAAAAGTAATAAATTTTGGTAAAAAGCGGCTGGGTGCGGGGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAACGTGGGCAGATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAGACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGTGGGCGCCTGTAGTCCCTGCTACTTGGGAGACTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGATTGCAGTGAGCCAAGATGGCGCCCCTGCACTCTAGCCTGGGCCACACAGTGAGACTCCATCTCAAAAATTAATTAATTAATTAATTAATTAATTAATTTTGGTAAAAAGCTAGCAGTTTCTGTCACAAATAGTAAGCTCCCAGAAGAGCCAAGACAATTTTGAAAAAAATAAATAAGATGAAGAACCTGTTCTAGAATTTATGAAGGCTTATTATGAAGTTCTAGTAACTGCTAGTAACTAGACTATGTGTGAGAAGTATACAAAGAGATTAATTGAAAACTAGAATACTTCAAAGTGCATACACGCATAATATATATACATATGCGCACACACACACATATACACACAAACATAAATACAAACACACACATATCTGCTATTCGAGAGAGAAGGAATAACAAATGAATACGGAAAGAAGGAACCAGAAAGTAGTTCATGTTGGAACAATATGCTTGAGAAATGCAGAAAGAAAAAAACTCATCACCAACGACTTAGGTCACTCTCTTAGGTCTTACACAAAAATAAACTCAGATGTATGAAAGAGTACATCTTTCATGTACTCTTGACAAATACTTGAGATTATTAGAAGAATATGAAGGAATGTGCATTTATGACTTCTGAAAAGGAAAGTGCTTTCTAAACAGGACACACACACCAAATACACAATCACCAAGGAAAAGGTTGTTTGACCACAACAAAACTTAAACTTGAATACAATAGAAGAAAATTAGAGATTGACAAAATTAATAACTAGCAGCAAACAAATATCTAAAATACATAATGAACTCCTGCAAATAGGTATGACAAAAAAAAATCAACTGAGTACAAAAAGCTATTTCCAGAAGTCTAAGTGGCCATTCAACATATAAGACGACGCTCAAATTCTATGAAAAACAAGACAACAGACAACACAAATTCTAATACTGAGATACCCTACACACTCCATGTTTGTAAATAATTTGGCTCTGAGAAGCTGCAAATTGTTTTCTCTGTGTTCCTGTTCCACCCTCAACTTTCAAAGGCCTTGTGCACCCAAGCAGTAAAGGAGACCCCCTCCATTATCTTACCCTTCCCCCATCCATAGACTGCCATAGCTTTTTGCTCAGTGCAGTGCTTGAGATATGGGCAGGAGGAACTCTAGATTTCCTGCTCCAGCCTCAGTATTAGGTACTATAGATCTGGCCCTTGAGATGGGGCTTCCTCAACATGTTTTTCTCCCTACATACCAGCCAATTCCTACCTTGTATCTGTTGAGAGGTTCTGGACCTGTGAGAGCGTCCTCTCCCCCGCCGTGGTGAGAGCCTGTCTCTGCTTTGTATCCGTGCTGGGTCCTTGTTGCAAATCTCAGCTGCAAATTATCTTTGCTTGGGAATGGGAACTGGAAGCTTCCTGCCCCACCTGCAGTGGTAGCAGGCTGTTGCTTTTTACCAGGTGCAAGGCTTTTATCATAGAGCGACGTGGTTTCCTTCCTCTCCCTCCACAAAGTGGTTTTTTGCTTCTACCCATAACTTAGCAGCAGAAATTCACTTGGAACAGGAGTAAAGGTTGGGGGAAGGGGTGGTTGGTGGTTTACAGATTGCCCCTCATTAGCTGCTGATTTTTGCTTTAACTCCTCCCCAAGATGCAATAACAGCTTGTTTTGTGGGGCTGACAGGGATTCCTGTCCTTCTACCAAGGTTTCTAGATTTGCCCTTTGGAAAAAATGTTCTGAGACATGGGTAGATTTTGTGGCCTGTGAGCTACTGGGGGTCTTTCAGGTCTCTTGTTTGCATATGTATGTATATGTGTATATATATATATATATATATATATATATATATATATATATATAACTTTAAGTTCTGGGCTACATGTGCTGAACATGCAGGTTTGTTACATAGATATACATGTGTCATGGTGGTTTGCTGCACCCATCAACCCATCATCTAGGTTTTAAGCCCCACATGCATTAGGTATTTGTCCTAATGCTCTCCCTTCCCTTTCCTCTCACCCCCCAACAGGACCCAGTGTGTGATGTTCCCCTCCCTGTGACCATGTGTTCTCCTTGTTCAACTCCCACTTATGAGCGAGAACATGAGGTGTTTGGTTTTCTGTTCCTGTGTTATTTTGCTGAGGATGATGGCTTCCAGCTTCATCCATGTCCCTGCAAAGGACACGATCTCATTCTTTTTCATGGCTGCATAGTATTCCATGGTGTATATATGCCACATTTTTCTTTATGCAGTCTATCATTGATGGGGATTTGGGTTGGTTCCAACTCTTTGCTATTGTAATTTTTTTTAATGAATACTAGGTGAAGCCTGTAAAAAAAGAGTTGACAAATGTGCTGGGGTCCTGGTAATTGTAAACAAACACGCAAGCTGTGGGTCCACACTCAGCCATTAAAAATTTAACATTTCAGCTGCTTTCTCCCTACCTGCTTTTATAGTAGCCATGTCTTTCTCTAATACTCTACCAATTCTGAAACTGTTCATGGGTCCCTTTTATCCCTGGAGAAGGCTTTTACCCTTTGGACTTTAGTTTACCTAGTTACCTGTGAACTCAGCTCTTTGATAGACCCAAGAAAAGTTATAATTTTATAGATTATCTGACTTTGTTTCATTATTAGGAAAGTAGCAACATTCTCTTGAGAATTTATGCATTGTAAGTGAAAGAAAAATCCAGGAAATCTTATAGAGAATGGCAATATGGTTATAGATGAGAATGTGGAAAAGATGAATTTTGAAATACTTCCTATCATAGTACAAATTGCTACAATGATTTTAGAAAAAAGTATATCTATACACATACACGGAGATCATATATATGGAAATACGTGTGTGTATTTTTCCTGATGACTCTGCATAATAAACATAAATAAATTCTTAAAGATGGAAACAATAAATAAATGTCACTTTAAAATGACATTCGATTAAAGTGACATTTTAAAAAGACAATGTAAAGCTTTTTCCAGGCCAAACTATGGTGATTATCCTATATTAAGATTTTAATTCTTCAAAGAAAGATAGTAAAAAGTTCAATTTCTTTCACTAGGGAAAGAAAATTTTCTTTCATCCCACAACAAATTAGTAAAGAGAGCAATTATTTCTGCCAGAAATAACAAAGATCCCATTAAATTGTCTTAGATAGATCAATTCCTAAAACAGATTATTTATTCAGGTTCTTAAGCTAAATATTATAGAGTCATTAAATTGGGTGTTCAAGGATGTATTTATTGAAATTAAGAGTGGTGTATGTGTAGGTGTTGGTCTGGGTGCAATCTGGGGACAGAAACTACATAGTAATTAAATGAAGTAAGTTTAATATACAGAACTATTGAATAGTGACAGGAGAATAACTATAAAGATGGACTGAGAGCTCAAGAGGGCTTCCTAGGGCTGAGGGAGAATATCCAAAGAAGAATAAACATGAGGAGATAAGGTATTGACAATTGGATAAGAAGTGGTTGAAACCCACCGAATGGCAAAGAAGTCTGAATGGCAAGCTGTGGACACCAGTACTAGAGTGCACTCCTTTTGCAACAGGACGGCCAAAGGAAACAGAGCTTCGAGGAAAGGGATGTAGCTATCTGGGGCTCCCAGATATACTACTGCTACCCAAGTCAAGAGCTAGAGGAAACACACAGTGAATCCTGCACACTCTAGGTACTTTGCATTGGAGAAAACAATTTACTCAGTGGGGAAAAATACATTCTATAGCAACTCAGCAAATGAACTATTCTGATACCTGGATGGCATCAGATGCCTGCAGTGTCTCTACTGTCCTCTCTGCTGAAACAGCATAACATCATGCCAGCTGGCAAAGGAAAGTACTTAAAGGATTCAGATCCATTTTTATAGAGCAGGCTATGCAGAGTGAATTTAGGGCTGAGAGACAGTAAATTGATAACAGGCACAGGGCATCACAAATAAATGATGGAACAGAGTCTGCAAGTGGGGACGGAAGGAGAGCATGGGAGTAATACAATGCTGACTTGGGAACACTCAGACTCTTTGCACTCATTTGGAACATTGGAGTATTAGGCTACGTTTTTTTGTTGTTTGCAGGATATTTCTTTTTCTTAAGAACTTCATATTAATTTTATCTTCTTTCTTTTTCATTAAACAAG
Seq C2 exon
ACAAGATGAGGAAGAGAAAGATCAGTGTGTGTCAACAAACTTGGGCCTTATTATGCAAGAACTTTCTTAAAAAATGGAGAATGAAAAGAGAGTCCTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141338-ABCA8:NM_007168:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)