GgaINT1006764 @ galGal4
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1058436-1059430:-
Coord C1 exon
chr15:1059238-1059430
Coord A exon
chr15:1058548-1059237
Coord C2 exon
chr15:1058436-1058547
Length
690 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AATTTTATTTTGCAAATCAGCCA
3' ss Score
1.83
Exon sequences
Seq C1 exon
GTAGTTATGCCATGGGTGAGCTGGTTAGAAATTTGCCCAGCAGGCAGCAGAGATCTGCAAAGAACCTGGAAGAGGATACAGTGGTTGCTGTATTGAATACAATCCATGAAATCATTACTGACAGCTCAGAAAATGCAAGGTCTCTGATCCAGACACAGGGCATTCAGAAGCTGGTGGCTATCAGCAAGTCAAG
Seq A exon
GTGAGTAACAGTTGAAAACAAAATGTATAAAACTCACTGCAAACTTGAAAGTAGCACAATGCAAAGTAGTTTTTTGCTTTCCAAAGCCATTCTGACCTTTCAGAAGTGTAGCTAAACAAATATATACACAATAAAAAGTCACGCTTTCAGTAGACTTGTAACTTAAAAAAAAAAAAAAAAAAGAGAATGAAAGCCTGTTAGAACATGATGTCTTAGAATATGTCACCAATCCTTTCAAGGATTACTATTGATGAAGTCTTGTTTTAAATTAAATGGTCAAGGATGTGCAGTAATTGTTTTGGCTAAAGGCAGCTCAGAACTTCGTGTGTCTTGTGTTTTGTTTCTTTTTTTTCTCTAAATAAATCCAAGCAGGATGGAATCCATCTATTTTCTATTAGGGACAAGTACAAAATGAAATGAGCACCCTGGCCTCAGTGCTTGCCCAGGCATGCAATGTGAAAACACAAAAATCTGCAAAATTTGACTTCTTGGATTCTTTTGTCAACAAACACTTATATATGTGAAGTCATCACTAAATTATTTTACATACATCTTAAAACTCATAAGCCAATGAATAGCTCTGTGAATTAGTAGGTACCTCTTGTATATTGTTTTGGTGCAGAGAAGTTGACATATGAATAGTCTTATATTGCTTGATATTTAATGTTCTAATTTTATTTTGCAAATCAG
Seq C2 exon
CCAGTCTCCTCGAGAAACAAAAGCAGCGTCTCACGTTCTTCAGATGATCTGGAGCTACAAGGAGTTACGAAATGCTTTGCAGAAAGATGGCTGGAACAAATCACACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATGCCATGGGTGAGCTG
R:
TGGAAGTGTGATTTGTTCCAGCC
Band lengths:
302-992
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]