RnoINT0021501 @ rn6
Intron Retention
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86738594-86739005:-
Coord C1 exon
chr11:86738807-86739005
Coord A exon
chr11:86738706-86738806
Coord C2 exon
chr11:86738594-86738705
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCTGGCTGCTGCTGCTGTAGCCA
3' ss Score
3.87
Exon sequences
Seq C1 exon
GGAGCTACGCCATGACAGAGCTGGTTCGGAATGTTCGCAACGCACAGGCTCCTGCCCACCCCAGTGCCCACCTGGAGGAGGATACAGTGGTAGCTGTGCTCAACACCATCCATGAGATTGTGTCCGACAGCCTGGACAATGCTCGCTCCCTCCTGCAGGCCCGTGGTGTGCCTGCACTGGTGGCACTTGTGGCCTCCAG
Seq A exon
GTGGGTGAGGGCAGGGCCTGCTGAGGGCTGGGTGGTTTGGGGATGGAGGGAGACTGGATGCGCTAGGCCACTGACCCCAGCCCTGGCTGCTGCTGCTGTAG
Seq C2 exon
CCAGTCAGTGCGGGAGGCCAAGGCAGCATCACACGTGCTACAGACTGTGTGGAGCTACAAGGAGCTGCGTGGAGCCCTACAGAGGGACGGCTGGACGAAAGCACACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888:ENSRNOT00000044635:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGGTTCGGAATGTTCG
R:
AGCTCCTTGTAGCTCCACACA
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]