DreINT0033724 @ danRer10
Intron Retention
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25681076-25684215:-
Coord C1 exon
chr5:25684023-25684215
Coord A exon
chr5:25681188-25684022
Coord C2 exon
chr5:25681076-25681187
Length
2835 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
TGTGTGTTTATGCGTTGCAGCCA
3' ss Score
7.2
Exon sequences
Seq C1 exon
GCAGTTATGCTATGAGGGACTTGGTCAGCAACCTGCCCAGTGGCCAGCAGCGGCCAGCCAAAAACCTGGAGGAAGACACAGTAGTGGCCATCCTCAACACTATCCATGAAATCATCACAGACAGCTCTGAAAATGCCCGCTCTCTCATTACTGCTCAAGCCATCGACAAACTCGTGGCCATCAACAGGACCAG
Seq A exon
GTGATTTACTACAGAATCATTTCTCATTTCTTCTCATTTAAAAAATGAATCTTTATCATTCTAAGGAATCATTATTAAATAAATTTATATTAAATAAATGTGTAATAATAAATTTAAATGATTTGGTAAATGTGCTTTTTTTATAAAGTAAGTGTGACCACAAAATCGTTCATAATGTTATACATCATCTGAAAGCTGAATCATCTATTCATTAATGTATGCTTTGTTAAGATTGAACAATTTTTGACCAAGATCTGAAAATCTGGAAAACAAAATATTAAGAAAATGAATTAATATACAGTTGTCAGAAGTCAAAAAAATGTGCCCCCTGTTTATTTTTTCCCCTCATTTCTGTCTAACAGAGAGAAGTTTTTTTTTTTCATCACATTTCTAAACATAATAGTTTTAATAACTTATTTGTAGTAACTGATTTTTTTTATTTTTGCCATGATGACTGTACATAATATTTTACAGATACTTTTCAAGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAAGTAGGTTAATTAAGTAAACTAATCAGGTTAGGGTAATTATACAAGTTATTGTATAAAGGTGGTTTGTTCTGTAGACTATTGAAAAAAATATATAACTTGAAGAGGCTAATAATTTTGACCTTAAAATGGTTTTTAAAAACTTTAAAACTACTTTTATTCTAGCCAAAATAAAACAAATAAGACTTTCTCCAGAAGAAAATATATTGTCAGACATACTGTGTTGATTTCCTTGCTCTGTTAAACATCATTTGGGAAATATTTAAAAAATCTAAAACAAATTCAAAGGGGCACTAATAATTCTGACTTCAACTTGATTTGCAGTAGAAATTTTAAAAATGTCTTTGCGAACATGATCTTTACTTATTAATATAACGATTTTTCCCAAAAAATTAAAGATTAATCAATGTGTTTGACCCATCAAATGGCTCCAAAAATTAATTAGTTAAAAAAAGACTCAAAAAGATTAAAAAGACTTTCAATAATAAACTATTGAAAACATTTATAAATTAAGTTTTTAATTAAAATGTAATCATTAGTATAAGTAGCATTTTTGTCCCACAATTCAGATTTCATTGTTATACAACAGACAAAAATAGCTGATGAATATCAATTGTGCATTTCTAATACACTACCTTACAAAAGTCTTGTCGTCGATCCCAGTTATAAGAGCAACAAATAATAACTATGTGACTTCTAGTTGATCATGTGAAAAAGTGGCAACAGGTATTTTTCAGATGAATCATCTGTTGAACTTCATCCCAATTACAAATACTGCAGAAGACCTACTGGAACCTACAAGGAAGCAAGATTCTCACAGAAATAAGTCAAGTTTGGTAATGAAAAAACATGATTTAGGGGTTACAGTTAGTATGGGGTTGTGCGAGAGATCTGCAGAGTGGATGGCAACATCAACAGCCTGAGGTATCAAGATATTTGTGCTGCCCATTACATTACAAACCACAGGATAGGGCAGATTCTTTAGCAGGATAGTGCTCCTCATAATTCAGCCTCCATATCAAAGTTCCTGAAAGCAAAGAAGGTCAAGGTGCTCCAGGATTGGCCAGCCCAGTCTGGAAACTTGAACATTATTGAGCATGTCTGGGGTAAGATGAAGGAGGAGGCATTGAAGATGAATCCAAAGAATCTTGATGAACTTTGGAAGTCCTGCAAGAAGGCTTTCTTTGCCATTGCCGATGATTTTATTCATAAGTTTGAGTCATTGCAGAGATGTATGGATGCAGTCCTCCAAGCTCATGGGAGTCATACACAATATTAATTTATTTTTCACTGCACCATGACTTTATATTCAAGACTGTACATTATTTCTGTTGAGTGACAATACTTTTGTTTAAGCAAAGTCAGACCTCACTGTCCTAGTTAAATAATTAAAAATTGAGGCATGATCATATTTTATTTTGGTAAAATGAGCGTAATCTAGAGGTCTTTGCCTTTCAAATAAGCCACTTCTAATACCAAATGATCAACAAGAAGTCAAGTTATTATTTGTTGTTACTAAAACCTGGACAGGTGACAAGACTTTCATCAGGTAGTGTATATTATCAGCAAGAATTTCTACTCAAACCGAGAGTAAGTCATTCTATTGCAAACAAGATGACTCCAACTCTGAAGTGTGTAACCATGTCAAGCCTGTGCTCTACCTCCACTTCAACCAATTATAACTTCTTAAAGCGCTCTTAGTGTGCTGTGTACACCAACAACAGGTTTTTGATCTGTGCAAACATCTTACGGTTAGTCAGGGTCCTCCTCAGCTTTCAGAGAAAAACACCAACAAGAGTTGCGGCGCTTTGAAGTGTCTTATTTTTATCACCACACATGTCATCTTTAATATATGCGTGTGCAAAACTGAATATTAAATGCTGTAGTGCTGCAGATTTCAAAAGCAGGAGAGGAGACCTCAGGAGAGTAAGCCATATGTTAAACAAACCTCCTCCATCCTCTCCACGCGTGACCTCATTTAAAGCTTCACATCATTTCTTACCGCTTCTGCCCGAGTCTGATTTTACCCTCAAAACTAAATATTGATTGTGAGAGATTAACTTTTTAAAGAGTACACGCGCGACCAGAGAGCGTTTCTCTATCTCTTTCTGACTCTGGAGATGCGGCTTTGAAGTCTCAGGCTCCTGGTAATTAAGTGAGGATCACAGGAAAAGCTAACGAAGTGAAAAGAGAGGAATCTGTGGCCACAGGGGTTGGAGATTGGAGCCGTGGTGACTGGATGACTTTGAATGTGAGAGTTATTCCAGCGGGCTCAAGATCCCTCCTAACTCTGTGTGTGTTTATGCGTTGCAG
Seq C2 exon
CCAGTCGGCAAGGGAGACCAAAGCTGCTTCCCATGTTCTGCAGACGGTTTGGAGCTATAAGGAGCTGAGGAACGCCCTCACCAAGGATGGCTGGAATAAAACACACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688:ENSDART00000146070:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.305
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(9.7=15.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]