GgaINT1006775 @ galGal4
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1082785-1088838:-
Coord C1 exon
chr15:1088667-1088838
Coord A exon
chr15:1082857-1088666
Coord C2 exon
chr15:1082785-1082856
Length
5810 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TTTTTGGTTTTTTTGCACAGGAA
3' ss Score
8.52
Exon sequences
Seq C1 exon
TCCGTGGAGAATTGTGTGTGCATCATGAGGAACCTTTCCTATCATGTCCACAAAGAGGTCCCCGGAGCTGATAAGTACCAAGAACTTGATGCTGGTCAGACTGCGGGCACGGGAGGCTCTCAGAAAAAGAAGAAAGATGATGCTGGTTGTTTCGGTGGAAAGAAAGCTAAAG
Seq A exon
GTATGCCTCACAGAGAACCAAAAACTGGAAATGTCCTGGGGGTAAATTGTGCTGTTTGGTTCTGCTCTTGCAAGCCCTTCCGTCCTGCTAGAGTGATGCGGTTTGCAGAGGTACGTGTCTGCAGTGCTGTGGCACGTGGTCATCTCCCTTGCTGTGTTACTGCTCGGTGTTTGGGACCTATGTCCACAATTGCTACGTTCTGTTTGGCTTTAAGTAGGAGTGATGCATGCTGTTGTAAGATGCTGCTGCTGGATAATGGTGGATGTGCTCTCCCTATTCTTTTCTTGGCTGTGTTCTTGCATCTGTCAGATCTATGCTTAGTCTGCTTGCTTGGCTGCAGAGCATGTGCCGATGTCTTTGGAAGCCAGGCCAGCATGCGTCCATCTCCACGCATGGGAGTCCTGTCTGTGTTCCATGCCTTCAGTCTCCCACATGTGAAAACAAACTGAAAGGCTGTCCTCTCACTTGCAACCAAGAGATAGAACCTCCCAGTTCTGTCACTCAGTAATTTAAATTGCAAACACGATTTTGTAGCTTTTAATTGTCAGTCACTTTCAGACCTGTTCTTTCCTCTGGGATGTGAAAGTTGCAAATGATTTTTCATTTCAAGCAAAGATTAACAGTCTCAGTAACCCTGCTTCCATCTTCATCTTAAAAAGAGGCAGTGAAATGCATTTGGGTATAAAAGAAACCTGTGTTTTCTTTGGTGTTTTTGAGAAATGACTCTTGTAGGCTGAATTCAGAGGTAATGAACTCAGGTTCCTGTCTGGGCTCCATTCTCCACATTAGTGCATGCTCACATCCTGGCTTACTGTTCATGGCCAGGATCTAAGGAAGGTTTTGGTGCTGAAGGGAATACACGGGACTGTTTGAACTTGACAGACTGTGTTCTGTGCAGGGGGCTTCCTTTGATGTGACCTGTACATGTTGTGAGAACGTTTTGTGTTTCCATAAGCGTTAAAAAAGTCACCACAGAGTGAAGGCACGTTTCTAGAGCAGTCTGTCAGCAGAGATGGAGGCTGTGCTCAAAAAAAAAAAAAAAAAAATTAATTGCTGGGAACCTTCTAATGGCTGAGGGAAAACTGAAAAGACAATGTGACCTGCCTGGCCAGCCTGTTCTCATCGTGAATGCCTGAAACTTCAGTGTGATATCCTTCAGAAACCTGGAGTGCACGTTGACTTGAGCCTCTTTCCTGCCTCGTCACCCGTGTTGTTCGGCCACATGAGAGCAGCAGTCGGTGAAAGCACCTTTGTGTGTAGCACTGAGTGTGCACTGTGGAGGAGGGGGGCGTAGGGAAGAGCTGTGGTCGTCCTGCTGATGGCTGTGAAAGCAGGGCGCTCTCAGGTGGCTGTCCTTGGCCTCGTGTCCGCCACAGAACCTGACTGTGTCCTTTGGGATTAATGGCTCTCAAACCGTGTGGCACGAGGACGGGCCCACAGACCGAGCAGGCGGCGCTGGCGCTCAGGGACAGCCTGGGCTTGGCCATGCGTGTAAATGTGCTTTTAAAGTCAGAAATAGAAAATTCCTCTTCCCCCTGTTAAATTTATGTGAATACCTCGGCTGAAACTCTTAATTGTGTCGGCCGAGGGCTGGAAAATAGGTCATTTCAATTCCCTCTCTCTTTTGCTCACTGAATCTTGCAGCGTTTCCATATTTTTTACCTCAGTTCTACCTCAGTTCGTGGTCATCGATCGTAGCGTTTCAAACCCATCTGCAGGGGCCGGGCGGCCTCCCTCCCCACGGAGCACTGAGCCCTTTCCATGGCATGAGGAGAGGGGGGAGGAAGACCTGCAGGGGAGGATTTTCTCAGCAGGAACAAAAGGAAGAGAGTGGAATATCCTATTCTTTTGTTGGTTTGTTTTGGTGGGTTTATTTTTGTTTTTAATCAGTGAAAGTTCATAGTTTTCTTGTAAGTCTCAGGTTTTAACCTGTTTTGTGAAATTCTGCCTCTTTGTGACTGTTCCTTTGTATTTTCTTCCTTCCTGTAAATTCTTGTTTTTCTTTTGCTGCTTTTCTGGTAATTAGAGGAGTGGTTCAATCAAGGTGAGTCTCTGCAATACTTTCTTTTCATCATCACCATAATCTACATTGTTCAGCTTCTACATGCAAGGCAAAGAGCTGAGGTTAAGGTCTTGTTCGTTCACCTTCTCTGCTCCCCCATGCTCTGCTCCCTCCTGTTCATTTCAGCAGGCATGGAAATCCGCTGTGTAATTGAGAGAGCATTTTCAGTTTGTTCTTCTCACGCTAAGAGCAGAAATGACAAATTCCTATTCAGTCCTGGTATCATTGATTTGCAACCGGCCTAACAATCCCGTGAGGGGGGGCACAGGTAAGTGTGCAAGTTGCCTTGCTAAGCCTGTCGTGTCAAAGTATAGTTTTGCTAACTCACCTGGGTAGCAGTAAGTGGCAAGGCTCAGCAGCTTGGAATTGTACTCATAGAGCGCACTTTGTCAGCTAAGGAATGTGGCCTGGGCTTCTGCATCTTTGTTACTGACGTTCAGGCTGGCTAGATGAAGATACTGCAGTAAGCTGCTGGGGGCTGCACCTGTCAGCTTCTCATCCCAGCACAACAGGAGGAGTTGCCTTTGGAGCCGCACCTCCCTCACTCTTCAGCTGGCAGTTCGGTTTGGCTGTGCGGTGTCCTGGAGATTTCCAGTGTTCCTGATGCTAACTGAGGGGTAAAGGCAGGCTCACTGTCAGTTTGTGACGCTTGCCTCAGATCAGTGGGTCCTGGAGAGTTGAGTCAAAACAAAAATGTTGACAAAATTGCTCCACCCAACAAATGGTGCTTGTGAGCTTTCTGGGAGGCGCCGCTCGCAGACTGTGGCTGGTGGGCGTGCAGAGGGGCAGAGCACAGCCCTTGCCTTCCATCACCCACTGAACTGGATGGCAATGGAGCCTATTAACAAGCACAGCATTGATTGTTGCAGGGTGTCGTGAATAATCTCTTCACTGTTATTATTTTTTTTAACTAGAAGTGTTTGGGAATGAATCCTCCAGCAGGAGAGGTCTGGCTGAATAGCTGTATTGATTATCCAAGAAAACAAAGCGATATTTGAGGAAGATGATAAACAGCACTATTGGTTAATAACACCGGGTTATATCTCACAGTCCTTATTAAGTTTCTGACAGTGAGGATGCCAAAGGTCACATTTCGGTTGTTTTTTACATAAAAGTTGTGGGGGGAGAGGGAAAGAATTTTAATCCTACTGTTTCAGAGACTGTAAATTGCTTCTTGTACAATCAAGTCTCATGTCAGGCTGTTTTCCCAAAGCAGATTGCTGTGCCAATTCCTTCAGCCAGGTCTCATAAAACAGACCTGTCAGCAGGCACATTCAAAGCTGTCTGTCTCTTGGCCAAGTCTGGAGCCGTGCTTTTGATCCAGCAGTATAATCTTTTCTCTCCTGTTCCTAGAGCTGTAAAACTTGGGGAGGAAGGGAGATGTATAGCAGGGGAAAAAATTGAGATGTCCAAACCACGTGCCTTAAACTGCTAGCACAGTCTTTTAAACGTCCCTCTGCGCTAACAATGCTGGCAGGCTTGAGTGATATTCAGAGCTGCAGTGGCTGTCAGCGAAGCTGGTTTTCTCATGATGTCATTCAGGGTAGGTGATGGCTGAGAGGTCCGTAATTGATAGGCTCTTGAAATTGCTGAATGCTGTCACCTTGTTAGTAAATCCAAATCAATATTGTGGGTCTCGTGGAAATCAGATGGGAACAGGAGCAGCTGCACCACCTTTGCCTTCCAGATGGATTTCTTCTGGAGTCGTCTCCAGCTTAGTCCTCGTGTTCCTCATCCCCTCCCTAAAGGAAAGCCCTGGATAATGGAGGTGCTTTGGGAATTTCTGAACCTGGCCCTTGCTGAATTGGATTAAACAAGCAGTTGGTAAAGCAGAGATCCCATTGGTCAGAACTGTGTCTCCTGAATTTCTTCCACTAGTAAACAGCTGGCAGCTTCTGTTTTAAAGAGACTGGCTTTGCCTGAGGGCTGGATTAGCTCTTCTGAGAGACAAACCAGTAAAGGCTTCCTAAAGGATGGCCAGTATGTTCGGTCTGGCCCAGAAATTGAGACTGTGACTGAAGATTAGAGAATGCAGGGTGGAAAGATGGCCTAATAAATAGCTGCTTCTGCACTGCCAGCTCAAAAGATGCAGCAGCCTATGCTGCTCTCCTGGACAGTCTCTTCTTTAACTGGTTGTGTGAGCACATACAGCTCTGAGCAGGGCACGAGGCTGGAGGGGTCCTCCTTCTTACTGAGCCAGCTCAGGTCTGCAGGGCTAATAGAAATGACAATCTGCTATCTTTATGGAGAGAACTTCTGAAATGAGTGGTTATGTTGAGTAAAGTCTGGCTCTCACTGCAGTTATTCTTAGGCTTTTTGACCTAGCTAATGCCAGAGACGTGAAACTGGGGGTGTGTGAAAGGAGTTAGTCATACTTGTAGATATGATGGAGTCCCATTTCTTGGTCTGTCCCAAGTCTGTAACGTTTCCTAAACAGTGACTTCTGTCCTCTCCTGTCCCTCTACTCGGGCGGTCTGCAGCGCTCCGCAGCCACCAACAGTGTTCAGCTGTCGTTATGAGATGTAGTGTCCTTTACTGTACATTTTTAATTTCTGGTATTTCGTTCACCAAGCAGTATGTTTCATGTTCTTTATGGAACAAAAACTAGATGGAGGGCTGTGGCGTTACAGCTGCGTCCTGTCCTTCCCTGCAGGAAAGGTGCCTTTCGGAGCGCTGGCATGCTGTATGGTCCCATGACTTTTTGGCAGTTTAGAAGGATGGGCTTTGGGGCTTTGCCATACTTTAATTTAGTGGCTTCAGAGGAACAGAACTTCCAGATGCTTTTTGGTTTTGTACGGCAGTGAAAGTTGGCTGATCCTGTGCTGATGTTTCAGAATTAAAAAAAAGTATTTCCAAGGAAAGGGTGGGGATGTAATGCTGTCCCGAGGGCTCTTCTCTTACTGATGTTTCTAAATGTTCACATTGGTATCTAAAAGCACTGTTTCTCTTCTGTACTGCGTACGTTTATTCTTTCATCCAGAAGGTAGGATGGTTTCTGGAATTCATGGTGAGAAACTTCCAGCTTCCTGCTATAAGAGGGCAGGGATTGGCCTCTCCCATTTTGTGATCTGTTCCAGTTAAGAGCCAGACCAGTCTCCGTGTTATACTTTCCAAGCAGTGTTTGTTCTGTTTGCTGTTAAGCATCCTGACTTGTGGAACTTTCAGCCCTTCCTGCAGACCTCCCTGAACAGTCTGGTAGGGTCTCTGTTCAAAAGCCACCCCTGGCAGCCAAACTGGGTGTGAATTCATCCCATCGCTCGCTGTTGCAATTTCTTCCCCTGTTCTTGAGGGAGAGGGACTAAATAACAGGATTTTCACCCTGAAGTAATTTGGGAAGGCTCAGTTGTGTAGTGCTGCCCTCAGAAGCCATGTAGATTGCTGCACTTCCTTCAGAATCTTGTATTTCTATTCCAGAACTTCCAATGGCAGTGCTTGGTTATCCCACAGGGTCTGTGTGTGCTTACCCAAGCCAGAGTGTCTCTGTGGTAGGGGAAGAGAAAATTAACACTTCTTCCCAGCTGCATTCATTAAATTCAGTCCATAGCCAGAAGTGAAGTCACGGTGCTGTTCCACTCTTCTGTGTAGAACTGTTTAAATTAAAGGTTATGTAATGGTTTAGAACTCTCTCTTAGCAAAAATATGAAATTGTTTCCATTAGTTGCTAATAAATAGCTAAAATTGCACTTCATTGATTGGTCTTTCACCGTCTGGTTTTGTTTTGTTTTTGTTTTTTGGTTTTTTTGCACAG
Seq C2 exon
GAAAGAAGAATGGAGATTTGGACAGGAGTTTTGATACACTTGATTTGCCGAAGCGGTCTGAGACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.445 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(4.9=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]