HsaINT0012978 @ hg38
Intron Retention
Gene
ENSG00000099889 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:HGNC Symbol;Acc:HGNC:728]
Coordinates
chr22:19976706-19977586:-
Coord C1 exon
chr22:19977415-19977586
Coord A exon
chr22:19976724-19977414
Coord C2 exon
chr22:19976706-19976723
Length
691 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TGCTTCCTCCGGCCTCCCAGAGG
3' ss Score
6.43
Exon sequences
Seq C1 exon
TCGGTGGAGAACTGCGTGTGCATCATGCGGAACCTGTCCTACCACGTGCACAAGGAGGTGCCCGGGGCCGACAGGTACCAGGAGGCCGAGCCCGGGCCCCTGGGCAGTGCTGTAGGCTCCCAGCGCCGGAGGCGGGATGATGCCAGCTGCTTTGGAGGCAAGAAGGCCAAAG
Seq A exon
GTGGGTGGGGCGGACTGGGGTATCATCTCTACCATCTCAACTCCTGCCCCAGCGGAAGGCTCTCTGTACACCCACAGCAGCCCATCATGGAGGCTAGAGGACACCTGGTCAGCCCCCAACAGGCAGGCAGGGAAGCCAGGAGTCAAGGAGGCTGGACTGCCCTGGGTCACATGGTTGATGGGACCCAGGTCCAACCTTCCCCATCTACACTGTGGGACCCCCAGGGAGTACACAAGGGAAACCAACCAATGCCCAGACCCAGTCTTTCTACTCCGGGGAGAGTTCCACTTGCCCATGAGTTGGGAAGGAGCCATGGCTGCTGCCTGCTCACTGTTCACAGAATAGCTGTAGACTGCCACCAACCTGTGGGGCAGCCCCCCATCTGCCTGGGCAAGATGCCCTGCACACCTTCTCTACTGCACTAGCAGGGTGTAGGTTCCCAGGACCTCCCCAGCAGCTGTGGGGGACCTGTACGCCACCTGCCCCTGCCCCACTGACCCCAGGCCTCCCTCTTCTTGTACCCCTGGTGGGTGCTCAGTGCCCAGAAGTGATGGGATGAGGTTCCACATGCTGCCTGCTTGATCCAGGGTGTGCAGTGGGAACCTGAGGCTTCCGGGAGGGCATGGGGGGGTGATGAGTGCTGCCTGTTCAGGCTCCTCTCCTCTCTCCTCTGCTTCCTCCGGCCTCCCAG
Seq C2 exon
AGGAGTGGTTCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099889:ENST00000263207:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development