GgaINT1009599 @ galGal4
Intron Retention
Gene
ENSGALG00000001262 | CLIC4
Description
chloride intracellular channel 4 [Source:HGNC Symbol;Acc:HGNC:13518]
Coordinates
chr23:2463056-2467825:-
Coord C1 exon
chr23:2467668-2467825
Coord A exon
chr23:2463182-2467667
Coord C2 exon
chr23:2463056-2463181
Length
4486 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCCTTCGTATTTCACCCTAGAAA
3' ss Score
8.93
Exon sequences
Seq C1 exon
ATGGCACAGCGGCACCTTCTAACAGCTGTCCTCTGCTCTCTCCTGCAGGCTGGAAGTGACGGGGAAAGCATAGGAAACTGCCCTTTCTCACAGAGGCTCTTCATGATCCTTTGGCTGAAGGGAGTGGTGTTCAGTGTCACAACAGTCGACCTGAAGAG
Seq A exon
GTAAGGAGTGCTTGGTGCATCAGGAGCAAGAGTGCAGTGCTGGGGCAGGTGTTTGTGTGGGGCTCCCAAGTCTCGCATGGCTCTGAAACATAATTTATGTGTTTATATAATCCTTAGAAATACTAAGCAACAACCGTGGTGTAAATGGTAGTAGTGTCTATAATTATATCATAATCACAGGATCACAGAACGGCCTGGGTTGCAAAGGACCACAATGCTCATCAGTTCCAACCCCCTGCTATGTGCAGGGTCGCCATCCAGCAGCCCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTGCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTTCAGTGCGTCACCACCCTCTGGGGGAAAAACTTCCTCTGTTCTTCTCTTGCAAAGCCAATCGGTAATGTGGGGTCTCTACAAGCACTGCAGGTTGCAACTTTGATCCAGTAGCCAATGGATGCTGGATAACTGTGACAAACAATAACGTGCAGCCACCCTTCTCTTTAAGGATATTAAGGTGAGGTTGGTTATCGTGCAGTGAGAATATGGGAATGGCACAGTGCTGCGTGTCACCTGAGCTGTAACTCCTGTAGCTATGGGAGGAACACCTGAATGGGTGCGATGGGAACAGGGGATCTCAGTGTACTGAGGGTGGGTGTGCTTTTATTAGGGGCAGTAATGCCCCATTCAGCAGAGGTCTGCTTCTCTCTGGTGGGAGCAGCGTTTGCACAGCACCGATGTGACGTCAGTGGCTGAACTCCCTGGAGAGGAGGAACTGCTTGTGCACACAGAGCTTATTTATGGAAATGAAGCCAAAGGAAATGCAGCATTCTCCAAAGAACTGAGTGTAAAACGTGTGAGTGCTGCAGGACTTACTCTCTTCTTTTAATCTGGTTTTGAAGGGACTGACGTGCTTTGCTTCTGCTTCAAGAAATATTGCATCCTCCCCTCTCCCCCTCCATCTGACTCTGACAATGCTGGTTTTCAATTACCAGTATTACCTAATTCCCTGCCATAAGACCGAGGCAGACCACTCCAACAGAGGGTAAAAAAAAAAGCAGCTTTTGTCCATTGTTTGCAGCTTTAAGATGCTCTTTGGCCAACGTGGGGTATTACTGCAGATGTAATTATTGTTGGATGGGGAACAATGAGTGCAGGAATGGGTCGGATGAGCTCTGTGTTTTGTTGCACACTGAACATCTTCTGGTGCAGGATGGAGCACTGAGGCAGGTCCAGGTTTGAATGGAGGGTGATGCAAACTTGATTGCATCAATCAATTGCTTTTAATGAAGCTTTGGAAGAGGGAGAGACAAACAGCACTGTTCTGGATGGTTTCATAGCCCGTTGCAGAATGCCAACTGCTCGAGTGGAAATGTTTTATGGTGGTTTGTCCCCTGTTAGCATTACCAGAGTGTGATAAGTGCTGGATAGGCTCTGCCTTAACACTTCTAATGTTGTCATAGGAAACTGATTTCACCAATCCATTGTTCAAGCTAATTACTGGGTTGGTTTTTGTATCCTGTGATAGGAAAACAAACTTGTTTGAGAAGTGGGTAGCAGAGCTTTTTGCATCTGAATTTACTTTGGTAGCCGAAAGGCAGCGTTTCCTTGCAGAGCGTGCTTCAGCCTCAGTGTGACTGCTGCCAGGGGTGAAAGCAGCTCTGTCTGTGCAGCTCCAAAGGTCAGGGCCGGATGGAACAGCTCACGAGTTAACAAGTTGGGATGCTGGAAAAAATGAGTCTGGGTTCATTGACTTTGTGACATGTATTTTCCCCTTCCATACTCGCACTGAGCGTCACGCTGAGCTCACAGGGAACGTTTTGCAGCCCTCAGTTCTCCTCTGAGGACACAACGTGGGCACGCGGGCAAACGGAGTGGGGAGTGGGGCTCTGTGGAAGGAATAACGCCTTTCTTCCCTCTGTGTGGTCACACAGAGCCTTCATTCTCCCCCGTCACAGAAGCAGCGTTTCATCTGATCTGTGCTGCTGACGAGCGGAGTCGCAGTACATCAATCAGGCCGAGAGCATTGTTGGGCTCACAGCAGCACTCCGGGCCGGGCTGCGTTCAGTTGGGTTGTGAAATCCTGTTTTCAGCATCTCGGTTGTGTCGTTTTGGGTTGGCAGGCGGAGGTTAAATAAAGGGAGAAGTAAATATTAAAGACAGCCCAGGGCTGAGTGCACCTCCGTGCTGCTTAGGAACTGGTGGCAGCGTTGGGTTGGGGTTTGTTGCCTGCTGATGTTCTCTTCACGTTGCCCTTTGGGCCCTCATTTCAGTACTGCCATAGTTATAAATGACTGAGTGGACATCAGTGTGCATCACGTGGGAGTTGGACCAGGTGACCCTTAAGGGTCCCTTCCAACTCGGGCAATTCTCTCACTCTGTGTCGTATTTGGGGCTGGCTTTTGCCTGATCTTCAAGAAGTCGTTCAAGCAATGGGTGTTGTTCTGCTTTGTGGCTGTTCTGTAGCCAAACTGTGACGCTGAGGAGTTTGCCCATGTAATTAGCTGGTGGTAGCTGGGTGTCTGAGCCTGTGCTCCTACCTCCAAACACCACTGCAGGCTTTAGGGCAGGTGCAGACTGCCACGGCGTGGCTTCAGGTGGTTAAAGAACACCTTTTCAACAGCCCGATTTCATCTCTGTAGTGGACATCTCTGTAGTGGACATCACTATAATGTTTTTGCTGACGTTCATGTTTGGCTGCTAAGGGAAATTGCACTCAGAGCCTTCCAAAGGCGTTCTGCACGCTGCAGTAAAGCCAGGGTTTGTTGCATGTCTGCTATGGAGCCAGGCCCACACCGGGGAGCCAGGCCCACACCGGGGAGCCAGGCCCACACCGGGGAGCCAGGCCCACACCGGGGAGCCAGGCCCACACCGGGGAGCCAGACCCACACCGGGGAGCCAGGCCCACACCGGGGAGCCAGGCCCACACTGGGGAGCCAGGCCCACACTGGGGAGCCAGGCCCACACTGGGGAGCCAGACCCACACTGGGGAGTCAGACCCACACTGGGGAGTCAGACCCAGCCCTGTGGGCTCTGGCTGTGCTTTGTTAACCTCTGCTTTCTTTGGAAGATGCACGCAGTCCACGTGGGGTGGTAAGAGGGGCTCATGGCACATCAGCCCTTGGGACAGGAGCTCTGATTCTTTGGGAAAGAGCGTGGAAAATGAGGTTTGTGGTGGATGGGACTGGTCTGTTTCTGAAGTGAAATCCTGTTTTGTTGTAGCGTTGCTGTAAATCTGGTGCTGCTCCTGTGTCGGTTTTTAACACGACATCCCCTTTGAGGAATGTTATCTAGGCGAAATGCAGAACTGGAAGTGAGCCACAACGACTTCCTCTAATTGTTGTGGGTTACAGAGCTGTGTTTAAACGAAGTGCTGAGCTAAAGTTAGTGCTTTCACCCATGGCAGACCTTAAATCCTGAAGGTAAGAGGGCAGTGACAATTCGTGCTTCGTGGAAGCTTAAAGAGTGACTGAAAACGGTTCACTTCTTGTATTAACATCTGACTTCTGCCACCTGGCTGCAAGCAGGGAATTTAATGGTCTTAAGAATGGAAATCCTTCTCCTTCTTCAGCTTTTACACATACAGCCACGTGCTCAGCCCTGCCCGGATTGCTCTGTGGCGCTGTGTCCCATGGCTGTTTCCTTGCAGAGGGGAGAACTGCGGCAGGAGACCTGAATCTTGTAAGAAAAGCTGCATTTCCAGCACAGACCTGTTGCTGTGCTGCTTAACACTGTTTGAGTGCTGTCCCCAAAAGCTCTGCTTTCTCACGCTGACCTCGTTTGTTCACGTTACCAACCTGCTGCCCTGCACAGCGTGGCCAGGAGGCTTCCCAGCAACACTCCTGGAGGGAGAAACCAATTGCTATGGAGCAGAGAGCCTTAGCTTGGCTGGGGTTGGAACAGCAGGAGCTGAAGCAAACCTCCCAGCAGCAAAAGGCATCAGCAAAACCAACACGTGTTTGAAGCTTGCTTCTCTGTTCCCTTGGGTCTGATCATGGTATCATCCAGCATACATCTCACTTTGCCCAGAGCCTGTGCGCACAGCCAGTTCATCCACAGGGCTCTCTGAGGTTTGCTTATTTGCAGAGGAGCTCTGTGCAGTGTGGGGGGGATTATCTCTGCCTGCAGATTACGCTATTTATAAACCCTGTAGTCCAGATCTTGGACAAGAGAAAGTGTGTTGGGGGTGCAGTGCTGTGTATCTCCCTGTCCCAGCCGTGCTGTCCAACACTGAACCAAAGAAAACCCATCCAGAAGGTAGGAAGGAAAGTGGCTTTTCTCAAGCACTTGCAATGAATTGTTGGTAAGAAAACATTAATCGAGGTGTAAAGTTGCTTTTCCAAAGAAAGCTGGTGATGTGTTTTCTGAACTGCCAATTCGTTGGGAACCTCCAGCAGTGCTTTTGGGATTGTAGCACGGAGCGGTGGGGTCGTGGATGTCCCAAGCTTATTTCTGTGTTCCTTCGTATTTCACCCTAG
Seq C2 exon
AAAGCCAGCAGACCTTCAAAATTTGGCTCCAGGCACTCATCCACCCTTTATAACTTACAATGGTGAAGTGAAAACAGATGTGAACAAGATTGAAGAGTTCCTGGAAGAAGTTTTGGCTCCACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001262:ENSGALT00000001916:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=56.6)
A:
NA
C2:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(13.6=44.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]