GgaINT1011657 @ galGal4
Intron Retention
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4645780-4647601:-
Coord C1 exon
chr8:4647463-4647601
Coord A exon
chr8:4645867-4647462
Coord C2 exon
chr8:4645780-4645866
Length
1596 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CTATTATTTTTGCTTTTCAGTTG
3' ss Score
10
Exon sequences
Seq C1 exon
AACAGGTTTATTTACTCCAGATATGGCTTTTGAAGCTATTGTTAAAAAGCAGATAGTGAAGCTGAAAGGACCTTGCTTAAAAAGTGTGGATCTGGTGATGCAGGAGTTAATCAACACTGTCAAGAAGTGCACTAAAAAG
Seq A exon
GTAACTTACAAATAGATCTGGTAAGGTAAGTAGAACGTAATCATTATGGTAGTTAACACAAAGTCTTTTTTGCATTTTAGGGTATTATAAAAGATTACTGAGCTTGTTATTTTATCTATAGAGTAAGACTCTAAATAGTTACAACTTCTGCGTAACTCCGAACAAAGTAATGATGAAAATAGCCAAAAGTATCAAGTCCTTGAGCAGGTCTGGGGTGTGAGTACTGATGTACTGAAATTGCTGAGAAACGTCCTGTCTTGTTATTTACATCTCTCTGAATAACACAATTTTTTTGGTACCAATAAGGAGATAGATGAACTATTTCTTAAAACAGGGAAGGTTGATCATCTTTTGATGAAGGTCATAGGGAAGTGTGGGAAGGATTCACTATATTTTGAGCTGAATTTGGAGGGTATCCTTTGAATTAATTGCGCAGATTCTTTCCCATTGTTGTTGGCTGTGATTACTATTGCATTTTACTGATCAAGTTTTAAAGTACCATTATTGAGATGTAAAGATATAAAACGTTGCCACAAGGTGGAGCCTTTAAAGAACAAGAAACTTGGAAAATACTGAGAATGCTGCTCTGGAATCACGCACAGAAGAAGAGTAAAGCATGGAGATGCCACTTCAAGGCTGATAAACTGGTTTGTCAGTTGGTAGTATGAGCCCTACCCTGCTCACTTTTTCATGAGTACTTTTCATTACAGTACTTACAGCATATCATATCTTTTAGAGTGTGCTCAATGTTTAAGTGTCATATACAAGCTTTTGTTTTGCTTTTTTTCTTCTTTTAGCTTGTTTTTTCGGACCATTCAAACGTACATCTTATTGGTAATACTGCAGCTACTCTAAGTTAGAGTTAGCTAAGTGGGATAAGTGAACAACTTAGAGGCAAATGTATCAACCAGTTTAAAAACTTGTTAATATTTTGTTGCCTATTTTGTCATAATAGACAAGGAAATAAGATAGTTCATCATGGAAGCTCATTTCTGAAAGTTTTGTGATTTCTGAGTAGTCAGATAGAAGTACAGTTTCTTCTTGGAATGGTTTATGACTTGTGTTTTAGCTGCTGAAGCTTTGTTGCAGTATTCTTGTATATATCCATTCAGAATCTGTATATTGAGGAAAACAACCTTTACCCATTGCCTTCCCATTCTCTTCTGTGGAGCTTTGTGTCGGATGTAGGATGTATTCAAAGGATATGCAATTAGTTAAGAGTGGAATGCTACATTTGTAAGACCGTCAGCTCTCTCTAACCTATTATCCCAGATCTGCATTTGGAGCTTTCCCATACCTCTGAGTGAGATTGGTTGGATTGTTGGAAGTGTTTAGATTTCAGTGATACAGTTACTTTTATTTGAAACAATTGTCTTTTCCTCATTGTTCTACAGAACGAAAACACAGAAAAAAAGTCCAAGGGTTTACGTCCCTACAGTTTCTCTGGAAGATCACTATTAATAGCAAGTGAGGCTTGCATTTGCCAAACCATTTATCATACTTGCTTTCCTCCAAAAAAGAAAGTTGAAGTTTCTCTGTTTATATGTTATTGAAGCTACCCTGCAGATACGAATTTCTATTATTTTTGCTTTTCAG
Seq C2 exon
TTGGCAACCTATCCAAGATTATGTGAGGAAACAGAAAGGATTGTTGCTGGTTACATTCGTGAAAGAGAAGAGAAGACCAAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164:ENSGALT00000005010:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(15.6=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTTTATTTACTCCAGATATGGC
R:
TGATCCTTGGTCTTCTCTTCTCT
Band lengths:
224-1820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]