GgaINT1011784 @ galGal4
Intron Retention
Gene
ENSGALG00000026250 | DOK2
Description
docking protein 2, 56kDa [Source:HGNC Symbol;Acc:HGNC:2991]
Coordinates
chr22:1379457-1379958:+
Coord C1 exon
chr22:1379457-1379556
Coord A exon
chr22:1379557-1379779
Coord C2 exon
chr22:1379780-1379958
Length
223 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCTCCTCCTCCCATCCCCAGGCG
3' ss Score
11.86
Exon sequences
Seq C1 exon
AGGAGCCAGGAGGAGCAGGCGGTGGGGAAGGACAGACAGCTGAGCTCCGACGGCGAGTTCTCCATGGCTGAAAACTCCCTGTACAGCTCCCGGGGCAAAG
Seq A exon
GTGAGTGTCTGGGCCTGGGGAGGGGGCCGTGTCTGTGGGCAAGCAGCATCCTGCGAGCAGCTCAACCTTCAGACACGGCCTTCAAGTGCTTTTCCTGCGCTGCGGTTTGGCTGGGCTGGGTTTCGCCTTTATCAGCCGGACACCGCTTCCCCTCTGGGGCTGAGCTCTGCAGCACGGCGCTCCCTGCAAACGTCCCCCTCCCTCCTCCTCCTCCCATCCCCAG
Seq C2 exon
GCGTGGAGCACGACTTCGAGGTGACGCTGAGGGCCACCGAGTCCTCGGAGCGCTGCCGCCTGCGGGGCCGCTTCGTGCTGCGGGCGGGCGAGGAAGCCTTGGAGCTGCGGGACGTGCAGAGCAGGGATGTCCTTTACAGCTGGCCCTACCGCTTCCTGAGGCGCTTCGGGAGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026250:ENSGALT00000044208:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217412=IRS=PU(58.0=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCAGGAGGAGCAGG
R:
CTTGTCCCTCCCGAAGCG
Band lengths:
278-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]