MmuINT0052587 @ mm9
Intron Retention
Gene
ENSMUSG00000022102 | Dok2
Description
docking protein 2 [Source:MGI Symbol;Acc:MGI:1332623]
Coordinates
chr14:71175791-71176804:+
Coord C1 exon
chr14:71175791-71175878
Coord A exon
chr14:71175879-71176622
Coord C2 exon
chr14:71176623-71176804
Length
744 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCTTTCTTCTCCTCTCCAGGGC
3' ss Score
11.66
Exon sequences
Seq C1 exon
GGACAGAGGAAAGGGTCACCAGGACTGGAGGAAAAGAGCGGCAGTCCCTGCATGGAGGAGAACGAGTTGTATAGCAGCTCCACCACAG
Seq A exon
GTGAGAGTTGGGGCTGAGGGGCCTATGGTGCGGGAGGGAGGAGGCATGGGCTGGCTTGTGGTCTTCCTGCCTTGTGGTTACCCTGGGCCCAGCTTATCAGCGTCTCTTCCTGGCTTCTTGGTGTGGCTCAAGGTCGTTGGAACCCGGCCTACCCCAGTGTCTGCCTTGGCTCAGCCTGCCCTGACTGAGGCTGAGGGTCTCGGTTTGACTCTCTCTTTGTGGGGCGTGAAGTGATTGTGGGAGGAGAGAATTGCTTCGTGTCTGTTTGGCAGTGCAGGGCGTCCTGTGAATAGGGAAATGCGGTGCTGATAAGGGAGGCCCAGTTCTGGCTTTCTTTGTGCTTTCTAGGCTCATCACGGAGGTGTGGGAGAGAAACTCTTCCGTTTACACTCCACCCACGGGAAGGGGCACTGGCTATGGGAGTCGCAGGGGCAGGCTTCACCTGGGGCTTAGCATCAGGGTCTTGGGGAGTGATGGATGGTGTGGAGAAAACCAAGCTGTGGCTCTGGCAGCAGTGGCAGGAAGGATGTGGGCACAGGGTTGGGGTGGTATGGCCGAGGGCCTGAAGAATGCCTTCCAGGGGAGGAGGTGGGGTCAGCAGCCTAGGCATTAAGATCTGTGGTGGGATCACAGATAACACGAACAGGGTTTTCTCAAGAATTTCTGGCATGCTTACTAAGGATGGGTTGGTGGAGAAGGAGCCCACTGTTTCCTGAAGCTGCCTCTCTTTCTTCTCCTCTCCAG
Seq C2 exon
GGCTCTGCAAGGAATATATGGTGACCATACGACCCACAGAAGCCAGTGAGCGCTGCCGGCTCCGAGGGTCCTATACTCTCCGGACCGGGGTGAGTGCCCTGGAGCTGTGGGGTGGCCCTGAGCCAGGCACACAGCTATATGACTGGCCCTACAGGTTTCTTCGACGCTTTGGGCGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022102-Dok2:NM_010071:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217412=IRS=PU(58.0=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGAGGAAAGGGTCACCA
R:
GCCCAAAGCGTCGAAGAAAC
Band lengths:
262-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: