Special

RnoINT0050511 @ rn6

Intron Retention

Gene
Description
docking protein 2 [Source:RGD Symbol;Acc:1310966]
Coordinates
chr15:52452868-52453886:+
Coord C1 exon
chr15:52452868-52452955
Coord A exon
chr15:52452956-52453704
Coord C2 exon
chr15:52453705-52453886
Length
749 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTTCTTTCCTTCTCCCCAGGGG
3' ss Score
13.39
Exon sequences
Seq C1 exon
GGGCAGAGGAAAGAGTCACCAGGTCTGGAGGAAAAGAATGGCAGTCCCTGCATGGAGGAGAATGAGTTGTATAGCAGCTCTACTACAG
Seq A exon
GTAAGGGTTGGGGTTGAGGGACACTCTTAGTGTGGGCGGGAGGAGGCCTGGGCTGGCTGCAAGGTCAAGTCTTCCTGCCTTGTGGTTACCCTGGGCCCAGCTTATCAGCTTCTCCCTTCCTGGCTTCTTGGTGTGGCTCAAGGTTGTTGGAACCCAGCCTGCCTGTCACTCCCTTGGCTCAGCCTGACCTACCTGACTGAGGCTGGGGGTCTTGGTCTTGACTCTCTCTCTTCCTGGGTCCTAAAGTGATTGTGTGAGGAGAGAATCGCTTTGTGAATGTCTGGTTGTGCAGGGCCTCCTGTGAATAGGGAACTGTAGTGCTGATAAGAGAGGCCTAATTCTTGCTTGCTTTGTGCTTTCTATGCTCCTCATGGAGTCACAGGAGAGAAATGCTTCCATTAAAGGTCCATCCACAGGAAGGGTCACTGGCCATAGGAGGGTCTTAGGGTCAGGCTTCACTCGTAGCTTAGCATCAGGGACTTGGGGAGAGATGGTGTGCACAAGCTGCAGCTCTGGCACCAGTGGCAGGAAGGATGTGGGCCCAGCACTGGGGCGGTGTGGCTGAGGGCATGAAGGATGCCTTCCAGGGGAGTAGGTGGGATCAGCGACCTAGGCTTTAAGATCTGTAGTGGGATCACAGGTAACACGAACAGGTTTTTCTCGAGAATTTCTGGCATGCTTACTAAGGATGGGTTGGTGTGGAAGAAGTCCACTGTTTCCTGTAGCTGCTTTTCTTTCCTTCTCCCCAG
Seq C2 exon
GGGTCTGCAAGGAATATGCAGTGACCATACGACCCACAGAAGCCAGTGAGCGCTGCCGGCTCCGAGGGTCCTATACTCTCCGGACCGGGGTGAGTGCCCTGGAGCTGTGGGGTGGCCCTGAGCCAGGCACACAGCTATATGACTGGCCCTACAGGTTTCTGCGACGATTTGGGCGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013922:ENSRNOT00000018725:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.533 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0217412=IRS=PU(58.0=95.1)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGAGGAAAGAGTCACCA
R:
CTTGTCACGCCCAAATCGTCG
Band lengths:
270-1019
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]