GgaINT1011788 @ galGal4
Intron Retention
Gene
ENSGALG00000026914 | DOK3
Description
docking protein 3 [Source:RefSeq peptide;Acc:NP_001076832]
Coordinates
chr13:9506958-9507299:-
Coord C1 exon
chr13:9507212-9507299
Coord A exon
chr13:9507131-9507211
Coord C2 exon
chr13:9506958-9507130
Length
81 bp
Sequences
Splice sites
5' ss Seq
ATCGTACGT
5' ss Score
8.34
3' ss Seq
GCCTCGCTCTGCTCCCACAGTGA
3' ss Score
8.44
Exon sequences
Seq C1 exon
GGCAAAAAGGAAGCAGCGCAAAGTAGCAGCACCGGTCTGCAGCCCATCCCTATGGAGGAGAACTGCCTCTACTCCTCGTGGCAGGATC
Seq A exon
GTACGTGCTGCAGTGGGGCTGGGGGGGGCTTCCCACTGCGTGTGCAGCAGGGCTGACCCCGGCCTCGCTCTGCTCCCACAG
Seq C2 exon
TGACGGAGTTCCCAGTGCTGGTGCTGAGGACGGAGGCGGCTGCCCGCTGCGAGCTGCACGGGCACTACGTGCTGGCAGCCCTGCCCCACAGCCTGACGCTGAAGGATGCGCAGTCCCAGCAGCCCCTGCTCACCTGGCCCTACCCGTTCCTCCGCAAATTCGGCCAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026914:ENSGALT00000043441:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.0=3.3)
A:
NA
C2:
PF0217412=IRS=FE(57.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACTCCTCGTGGCAGGAT
R:
AATTTGCGGAGGAACGGGTAG
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]