HsaINT0051465 @ hg38
Intron Retention
Gene
ENSG00000146094 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr5:177504743-177505110:-
Coord C1 exon
chr5:177505011-177505110
Coord A exon
chr5:177504916-177505010
Coord C2 exon
chr5:177504743-177504915
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTCCTGGCCACCTGCCACAGTGG
3' ss Score
2.58
Exon sequences
Seq C1 exon
GGGACAGGGGAGGCCTCCTCAGGATCCACAGATGCCCAGTCTCCCAAGAGGGGCCTGGTCCCCATGGAGGAAAACTCCATCTACTCCTCCTGGCAGGAAG
Seq A exon
GTAAGTTGGAGGACGTGCAAGGGCAGCCTCAGCCCCCCACACCCAGGGCTGGGTCTTTTTGGGACTGACGGAGCTGTCCTGGCCACCTGCCACAG
Seq C2 exon
TGGGCGAGTTTCCCGTGGTGGTGCAGAGGACTGAGGCCGCCACCCGCTGCCAGCTGAAGGGGCCGGCCCTGCTGGTGCTGGGCCCAGACGCCATCCAGCTGAGGGAGGCCAAGGGCACCCAGGCCCTCTACAGCTGGCCCTACCACTTCCTGCGCAAGTTCGGCTCCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146094:ENST00000357198:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.511 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.6=2.9)
A:
NA
C2:
PF0217412=IRS=FE(90.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTACTCCTCCTGGCAGG
R:
TGGTAGGGCCAGCTGTAGAG
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development