MmuINT0052591 @ mm9
Intron Retention
Gene
ENSMUSG00000035711 | Dok3
Description
docking protein 3 [Source:MGI Symbol;Acc:MGI:1351490]
Coordinates
chr13:55625580-55625941:-
Coord C1 exon
chr13:55625842-55625941
Coord A exon
chr13:55625753-55625841
Coord C2 exon
chr13:55625580-55625752
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
GCCCTTCTTCCTGAGTACAGTGA
3' ss Score
1.13
Exon sequences
Seq C1 exon
GGTACCGGAGAATGTTCGTCAGGATCAGGACAGGCTGAGAGTCCAAAAAGGGGCTTTGTTCCCATGGAGGAAAACTCTATCTACTCCTCCTGGCAGGAAG
Seq A exon
GTGAATCGGGGGAGACCCTGGGGCAGCCTCGCCCCTACCCCAGTAGTGGTGTCTGGGAACTGATGAAATGCCCTTCTTCCTGAGTACAG
Seq C2 exon
TGACCGAGTTTCCGGTGATCGTGCAGAGGACAGAGGCCACCTCCCGCTGCCAGCTGAAAGGACCCTACCTCCTGGTGCTGGGCCAAGATGACATCCAACTGAGGGAGACATCCAAGCCCCAGGCCTGTTTTAGCTGGCCCTACCGTTTCCTGCGCAAGTACGGCTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035711-Dok3:NM_013739:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.0=2.9)
A:
NA
C2:
PF0217412=IRS=FE(57.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGAGAATGTTCGTCAGGA
R:
GGAGGTAGGGTCCTTTCAGCT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: