MmuINT0052591 @ mm10
Intron Retention
Gene
ENSMUSG00000035711 | Dok3
Description
docking protein 3 [Source:MGI Symbol;Acc:MGI:1351490]
Coordinates
chr13:55524219-55524580:-
Coord C1 exon
chr13:55524481-55524580
Coord A exon
chr13:55524392-55524480
Coord C2 exon
chr13:55524219-55524391
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
GCCCTTCTTCCTGAGTACAGTGA
3' ss Score
1.13
Exon sequences
Seq C1 exon
GGTACCGGAGAATGTTCGTCAGGATCAGGACAGGCTGAGAGTCCAAAAAGGGGCTTTGTTCCCATGGAGGAAAACTCTATCTACTCCTCCTGGCAGGAAG
Seq A exon
GTGAATCGGGGGAGACCCTGGGGCAGCCTCGCCCCTACCCCAGTAGTGGTGTCTGGGAACTGATGAAATGCCCTTCTTCCTGAGTACAG
Seq C2 exon
TGACCGAGTTTCCGGTGATCGTGCAGAGGACAGAGGCCACCTCCCGCTGCCAGCTGAAAGGACCCTACCTCCTGGTGCTGGGCCAAGATGACATCCAACTGAGGGAGACATCCAAGCCCCAGGCCTGTTTTAGCTGGCCCTACCGTTTCCTGCGCAAGTACGGCTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035711:ENSMUST00000047877:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.0=2.9)
A:
NA
C2:
PF0217412=IRS=FE(57.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGAGAATGTTCGTCAGGA
R:
GGAGGTAGGGTCCTTTCAGCT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types