RnoINT0050515 @ rn6
Intron Retention
Gene
ENSRNOG00000013564 | Dok3
Description
docking protein 3 [Source:RGD Symbol;Acc:1311840]
Coordinates
chr17:9642774-9643135:+
Coord C1 exon
chr17:9642774-9642873
Coord A exon
chr17:9642874-9642962
Coord C2 exon
chr17:9642963-9643135
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
CCCTTGCTTCCCGAGTACAGTTG
3' ss Score
2.34
Exon sequences
Seq C1 exon
AGTACCGGAGAATGTTCCTCAGGATCAGGACAGGCTGAGAGTCCAAAAAGGGGCTTTGTCCCCATGGAGGAAAACTCCATCTACTCCTCCTGGCAGGAAG
Seq A exon
GTGAATCAGGGGAGACCCTGGGGCAGCTCACCCCCACCCCAGTAGCGGCGTCTGGGAACTGATGAAATGCCCTTGCTTCCCGAGTACAG
Seq C2 exon
TTGCTGAGTTTCCGGTGGTGGTGCAGAGGACAGAGGCCACCACCCGCTGCCAGCTGAAGGGACCCTACCTCCTGGTGCTGGGCCAAGATGACATTCAGCTGCGGGAGACTTCCAAGCCCCAGGCCTGCTATAGCTGGCCCTACCGATTCCTGCGCAAGTTTGGCTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013564:ENSRNOT00000018232:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.0=2.9)
A:
NA
C2:
PF0217412=IRS=FE(57.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGACAGGCTGAGAGTCC
R:
CCCGCAGCTGAATGTCATCTT
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]