GgaINT1015709 @ galGal4
Intron Retention
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18391290-18398738:+
Coord C1 exon
chr12:18391290-18391521
Coord A exon
chr12:18391522-18398630
Coord C2 exon
chr12:18398631-18398738
Length
7109 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GTTTCACTTTATTCTTCTAGGGG
3' ss Score
8.5
Exon sequences
Seq C1 exon
CTGGCTGCCTGCTGAGGTGTCCAGGAGGGAAGGAGCGAGCTCACTCCATAGGGCTGCTGCGGCTGGGAGCCGGGTACGACTCAAGCCTTCAGCTGGAGAGCCCTGCTAGGGGAAGAGAAGCATTGGCACTATTGCCAGTGGGGGCCTGAAGCTACCAAGGAGCTACCCTGCAGAGCCCAATCCTGGAAGGAGACTCCAGCGATACCATGGAGGGCAGAGAACCTCCACCAAG
Seq A exon
GTAAAGGAGAAGGTGGGAAGTACGGCACTCAGGAAAGGTGAAAGAGTTGTGTGAGGACAGTCTGGGGAGATGGACAGGCAGAGGAAAGTTGCTCTCCTAGATGTAGAGAGCATTGCATTTGCTAGAAGCTCACATCTCTTGAAGAAGTGCGGGCTGTAGGAGGCAGCCCATTGTGAGTAAGTTCTGGTAGGTGCATGGCTATGCAGGGTGCAATGTTCTATGTGCTTTCCTGCCCTGGCCAGGCATAAGTAGATGTTGTAAACCATGCTTGCTCTCCTTACCCGTGACATTGGTTGTTCTTTTGGCATGTTCCAAGCCTCTCCTAATAAAATATTCTGGAGAACACTGTGTGCTCATAGGGCTTCACCTGGGAGCTGGCATCTAGGCTGCTTTCTCCCATCAGGTCTAGAGCCAGTAAGTATGGACTTCAGCAAGCATCAGCTTTAGCAAGTGCTGCCCACATCTAGTGGAATTAAAAAGTTGCTGTCAGGTCACATTTGGATGAAACTTTAAAAATGATTTGTTCCCTGACAGCGCGTCTCTAATAAGTGCTCTTTTTTGGCTCCTGCAGATGCCTGTCAGTGGGATCTGTCAGCTGTGTCTCTGACATCAGCCTGATGGCTGCACTGGGAGATGCCTGTCACAGCGTACTGCTGCCCAGTGCCTTGTTAGGGGTGTTTGGGTGGGTTTTCAGTCAAGGCAAGGAGGCTGTTTGCCCACCTGGCTGCTCTGGACAAGTAAAAATTATCAGGGTTATGCATATTTGTTGTGCGGAGGATGTTCTTGAAGCTGAAGTTGACAAGATGTGTTCCTTTATCTGTTTCTCCCTTTTTATTAAACTGGGCTTCATTGCACCTATTAAGTATTACCTTCTGAGCAACTTTCTAATTGTAGTGGTAACTGTAAATAAATTGATTTATCTGCATAGCAGCGGCAAGTATGGCTAGAACGCAATTAACCTGACCATTGTCATGCTGGATGAATTTAAGTGTCTCTTCCAGCTTACTTCAAGAGTAGGGAAACGCGTGCTGGAGCACCGCGCAATGGAGCACGTTGGGAGAGGCGTGCTGTGAGTGCAGGGAGCCCTGCGTTGGCTCTGGGCTCAGCCTGCTGCGTGCCCTGCGCTAAGTCCTGTGTGCTGCTGCATCCTTCTCATCCTCCACCTGCAAGCTGTGGAAAAATCTGCTGTGTTTTAAGCATTAAGACTGAAAACTACTTTCTCTGAGAAAGAGTGTTTCTCCATTTTAATCTAACAGTTCATCAAAAGAAAAGTCGTCTGTGGATAGCAGGCTTCTGGGTATGAGAGGTTGCAGTTAAATGGAAAACAAGATCATGTGGTAGATAAGCATACTGTGCTGATATCTTTTAAAATGTGTAATCTGTAAAATGACAACACCTGTCCCTGCTGTTGGAGCCTGCAGCCTTTGCTCCATGGCCCAGCCCTGCTGCTTTGCCTTTCCCACTGGGCTGTGCACTGTGATCTGTTAAGCCAGAAGCTTTGGAAGTGGCAGTGCTGCATCCTGCAGCCCCAGAAGAGTGATTATTCACTGGGTGATCTTTAAAAGGGTGCTTCCTCCTTGCTTTGGCTGCTTTAATGGAATCCTTATGAACCTTTCTCACAGCCCTCCGGGAGGAAACCTTCCTTCATTCTTTTTTTAATTGAAATAAAAATGAGAAACACGAGCTTTTTTGTTTTGGTTTTTATGACAGGAATTGCCCCTGTAAAAATAGATACAAAATTCTGGGAGGGTCCCATCTCAAGCACGTGGGAGTCATTAGAAAGGTGTGTGTTAGGAGCAACATTGAATAGAGGCTATAGGTCCATCTTGTGAATCTGTAAACCTTGTGAAGTTTGCAGAGGTGTTCCAGCAGCCAGCTGTCACTTAAACCCTGGGAGACAGGGAGCGTTTAGAAGAAGTAATCCTGCATGGCCTGGCTCAGAAATGTCAGGGACACAGTTCTGCTCGATTCTAACCCTTAGGTGTGCGTGGTCTGCCGGGTTCCCACCTGACCAAGTCTTTGCGATGCTGGTGGTGCGTGCTAAGTGTGGGAGTCTTCATATGCATGCCGATGGCTTTTGCCATTAAGCAGTCCTTTGTGTGCTTTCTAGCTCTTGTTGTCTCTACTCTTAAAAACCCGGATTTCTTTTCAGTTAAAAACCAAACCTGAACTTTGGCTGTGGAGCTTCCTGTCTGCAGGAGTAACCTGAAGCAGTTCAGCAGTTTGAGATCTGATTCTTAGCTAAACAATCTAAACAGGGAAGAAGACTTTGATAAAGTGCTGCCCCAGTTTCTGAGAAGTACATATAAAATCACAAGTCTCTATTTAATTGAGCAATAAACCACAGTGAAAATATGATAATAGAGAACTGAGCACATCATGGGACCACAAGGCACAGCGAGGAGCTTTCTTGTTCAAAATAAACATTATTAGAGCCATCTTCAAAAGATTAAGTCATTTGTACTGCAGTTACTGGAAATCTGCTGTCAGTGATGAGACTTACTGGGTCTTGTTTATTTTACAAATAGGATTTGCAGTCATAGGTTAGAGTATTAAAATCCCACATAAAGCAGATGCATGAGACGTGGTATCAGCAAAATAGCTTGAAATTCTTTGAGAAGCCTTTCAGTGCTCGGTTGCTGGAGGTGAGGAATAGCGTCCTGCAGGAGTTTTGCTTCAGCGGTTCCCATCTGCAAGGAGGGACTTCAGACAGGGCCTTGACTCTTGCTCAAGGAAAACAAACCTCCAGCATTGCTCTGAAGCCTGCTTTCTTCTGAGCGTGGAGATGGGGATGAGTGATGGGAGAGATTAGTGTGAAATGTTTACAAAGCAGTTGCATTTCCTATTCCGAGATCTTCAAAAAGCAGATGTCTCATTAAGGTATTTGATATGTAACAGTCAGTTTGATTTCTAAGTGTTTTCACTGCTAATTCTGCTTTAACTGCCATTATGAAGTGTTTGCATGGGAACACGAGTTGAAATCTCCCAGCTGAGTTTCAGTGACAGTATCAAACTTGCTGTGGCTGAATCAAGGTCGTTGGGCCGAGCACACAGCCTGCCTGTGCTGTTCTACTTGTTAGCATTCACTACGTGCAGTAGTGAATTACTAGCTCATTCTTAGGGTGTGCAAGATGGAACCTGTATGGATGTGACAAAAAATGGGCCCTGTGATTCCTACAGTTGCTGTCCCATCACAGACCAGGCATTAAAGCAGCACAGAGTGCAGGGCAGTGCTCAGGCTAAAGCTCCGGAGGTGTTTCCTTTGCTTTACTTCGCTTCCTGGATTTACTAATGTGCTCTCATATCCAGTCCTATGCATCAAAGCTATGGGAGGGCAGAATGACTTTGAGAGGCGCACCTTGCAGTTCTGGTGAGATTCCGTGGGGTTCTCTATTTGTTATTTGGGGTATCTTCTTAAATAGGGGCTTAGTTTTGTTTTCCTGTGCAGATAAATTGTGCTTAAAGTATATCTGAAGACACGCTGGCTTTTACGTAGATGATAGGCAGGATGAAGTCAATGCCTACGTAGTTAGAGGAATTTAAGCTATCAGGGTTTAAAAAGAGAAATAGCAGGAAGTGTTCATCTTTGAGGTGTTTTTCTGTGCTTATGGGCAAATACAGCCAATTCCCCAATGCCGCAGCCTGCCTCTAGTTCATATTCCATTTCTCATCTGAAGCATTGCAAAGTTTGTCAACCTTCCTTCTTTTCCCCCCAGACAGAACAGCCCTTGTTTCCTTTAACAGCTCACGTTGCTGCTGCCCACCATGCAGCCGTCTGTGTTACAAACCTCCAACACGTGTCTGCAGAAACCCAGCTCACCTTTTCTGTGCCCATATGCCCGCATTGCTGCACCGTCACCTCCTGACTTTCCATTTGTTAAGGAGTTTTACTTCAGCTTTGATGACGACACGGCAGCGCAGCCAGGAATTAGTTCCGTGCAGCACCAACGGTGCCCTTGGGGTCCTCCCCTCTAGTGATAATCAATGGCTCTTGGCGCTGTCCTATCTAAAATAAATAACTTGCAGAGTGAGGTTTATGTTTATCTACAGAGCACAATTGCTTTTTGAGCAGTGATTTTGCTTTGAACACCACCACGGGCTGTACATGCGGGAATCCCCGTGCCCGGTGCTGTGGAGCCGTGTGTGTGAAGGTCCGTGTGCCCGGCTGTGCTGTGTGCCCAGGCTGCCAGAGCTCTTCCTCCGGCCTCCCTGGCATAGGAACCCGAGTTGTCCTGAGACTCAAAGGTTTAGCAGGTTTAGTTTAACGCAAATAACTGATTAACCAGTGGACTAGTTTTGTTAGATGTCACTAGGCCTTGGGAGGAGGCTAGGAAAGCAGCTTACAACTAAACAGAGCTGCTTTGGAAATGATTCCCTTCATGTGTGACCGTGATGTGGGTCGCTCAGCCCCTCACCCCACCTGCTGGAGCCTGGGGGGAAATGCTGAGTGGGTGGCTCATGCTCTGGGAAATAGTTACTGTGGTGCCAAAATCTGATTGCACATCCTTAGGCCTGCTTGTATTCAGTGGGCTGGGATACCTGGGTGTTTTTTGCTGAGGAAAAATTCTTTTCTAGTGGAAATCAATAATTTTGACCTGCGTGTTTTCTTGGAAACTGCTTTGGCAAACATCTGCCTTTTCCAAAGGAAAATAATGCAGTCCTGGGAAGTAATTCCTGCTGAAAGGGATTCTTACCTGCTGTTGTAGAACGGAGGAGTTAAGAGCTAGAAATGCAATGTGTGTAGTGCTGCTGTAATGCTCCACAGCCCCAAGGCTCCAAAGTACCAGAAGTCAGAGCAGAGCAGGCGTTGTGTCCCCAGAAGTATCACCCTTTCTCTGGGCTTGGCTACTTCTTGCTTGGGGCCCCGTGAGCTTAAGGCACAGCTTTCATTTTGAGAACCTGAGAGCTTGTTTAGTGTGCAGTTTTTGTAATTAACTTCCAAGTCAGGAAATAGGGAAAGCTGAGATTCTGGTGATGCTAATTCAGTCTCTCTGCTTATTTCTGATGTCTTCTGGCATGTATTTTAAAATAGATAGCGATGGTTTCTGTCCACTTATGAAGAGGGAAGGGAACTTCTTTTTCACACAGAGGGTGGTTTTTTCACCCAGAAGGTGGTGACACACTGAACAGGTTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGGCTGCTGGTTGGCGACCCTGCACATAGCAGGGGTTTGGAACTGCATGAGCATTGTGGTCCTTTTCAACCCAGGGCATTCTGTGAACTGGGCTCTGAGGCATATGCAGTGGCCAAAGGACTTGGCACTAAGCAAGTAACCTGAAGCCAAACACAGTGCTTCTGTGCATGCAGGTTTGATTTTGGAGGAGCTGAGGCTTCTCACTCTGCAACTCTGCATGTGATCTTGGCCTGTTCTCTTTTGGGTTTAAGTTTTTCTTGTGTTTTTTTTTTTTCATTTTGGTTTAAATTGTACAAGTGGCACAATGACTTACAGCCATGAGAATGTCCAACACATGTTTTAGCTTAACAACTATGTTTATTGCCCCCCATCCCAACACTTTGGGACCATGCAGTGAGGAGGGATGGCTGTTTGCAGCTTTGCAGAAGAGAAGTGCAGCCTTTGGTTTTTGCCAGCACTCTGATATCTGCTGTGTATTATCAGCATTAACTTTTAAATCCCCCAAATCTGACCTCATTGATCTCTAGCTTTGCTTAATAAACTTGAGCCCTACACCTTTGGTAAACAAGATAATGCTCAATGGAGAAGAATATTTATCCCACGCACATGTCAGGGCTGAGCTCTATAACAAGCATAATTTCCTGCTGCGTATCTCCTGATGGTAGATCGCTTGGAGTTGATTTTGGTGTGTCGTGCTTGATGTGAGGGAGGGTGAACATGTTTGCAGTTATTTTCCCCTGCAGTCCTGTCCTGGGCTCTGCTCTTTGGAGCATCGCCGACCTGCGGGAGTGAGCGGCTCTGGGTGTTCTGGTGCCTGCTGGTAGGAGCCTTGTGGGCAGAAAGCTTCACTCGGTGTTTTGAGGTTGGTGATCAAAAGACGCAGCTTAGGAACGTCTCCAAGAAACCAGGAAATGGCTTTTGAAAGGACATCTTTGAAAAATCTCTCTGGTTGGGCTTCTTTTTTATCAGGGCTCCTGTTGTTTGTCTCTCTCTGTTGCTGTGGCAGATGGAAATTTGCTGTTCTCTATTTGTTTAAATGACAGGTAAGTCCTGTGCTGTTCAGCCCAGGATTTGGGGCTTTTGAAGAAAATAATGGTGTTCTTAATGCTGCAGAAGCTGATCAGGCTGTCGTGGCCCCTCTGCCTTACTTGTTTTTAAACAGGATTGAATGTTCCTCGTTTCACAGGGATTTGGCTTCTTGATGTGTCGTTTAAAGTATTTGTCTCTGAAAAATCTTAAGCTTTACATTTTTCAGATGTGAAATCCATTGTTGGGCATACTGAATGGGTCTTGCTGTAATGCCCTATTTGAAGCAGCAGCTCCGGGTGCATGGCTCACCCCAGTATTCCTGTGGGTGACAGAAACTGTTCCCTTCCAACTCCAACGATTTCTATGGTTCTATGAATCATGGCACTGTTTTACATTACTATTCCTGTGAGTGTTATTTCAGCACACCAGAGGACCCTTAAATACACTCATACCTATCTCTCACTGTGGCGGAAGTGTTTAGGCAGAGATAGAGGTTGTAATACAGATGGTACAAATAATGGAGCTTAAACCGAAGAACTATTCTTCCTTTTTTTTCCCCCTCTTGCATGGGATGAGGCACGCTGGCACGCCTGACGTGAGGTATCTGTGAACATCTGTGGGGTAGGGACTGGCTTCTAGAGAAACAACCCGTGCTGCACGGGGTGCCAGCAGCCTGCTGTTTTTCCCTAGCTTATTTTTCTACGCAGGCATTTTGGCATGCTGTGTTATCCTTGATACCTGAAATTCCAATGCAGGAGCTTGTCCTGTTTTCCAAACAAATAAACACAAAGGGTCCTATTGTTGTAACCTCCAGCGATTTATATGGAGAAATCATTCTACCTAATAAGTAGTAATGTTTCACTTTATTCTTCTAG
Seq C2 exon
GGGCTCCAAGCCAGAGATGACCGACAAGATGTCGAGCTTCCTTCATATTGGAGATATTTGTTCTCTCTATGCAGAGGGCTCAACCAATGGATTTATTAGCACTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013506:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.270
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087096=Ins145_P3_rec=PU(11.9=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]