GgaINT1023385 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11196207-11196721:-
Coord C1 exon
chr15:11196639-11196721
Coord A exon
chr15:11196361-11196638
Coord C2 exon
chr15:11196207-11196360
Length
278 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCCCCACGCCCTCCTCACAGCCC
3' ss Score
9.6
Exon sequences
Seq C1 exon
GTAAAGGTCCCTCTGGATGCACCGGGTCCCACGGAGGGCTGGTTCCAGCTCCTGCCCTTCCCCAGCAGCACCAAGGAGCCAGG
Seq A exon
GTGAGTGTGGGGCAATGGAGGATGGAGAGTGACAGGACAAGGGGCAGGGTGCAGCCGTGCCTCCCCATCACGCTGTCACTGTAGGGGACAGCTGGGCTCCCTGCGGCTGACGGTGCGGCTGCTGGAGGACAGAGTCCTGCCCCAGCACTGCTACCAGCCCCTCATCCAGCTCCTGGCCGAGCCCCTCTGCTGCCCAGGCCAGGTGGGTGCTGCGGGCTGGGGACACACTTGTGCCATTTGTCCCCATGGTGTGTGACATCCCCACGCCCTCCTCACAG
Seq C2 exon
CCCTCAGCCAGCACGGCACTGGCTGTCCTGGAGGAGGTGACCTCAGGGGACAGCAGGCAGGACGTGGCCACCAAGCTGGTGAAGGTCTTCCTGGCTCAGGATCTGGCCGTGCCATTCCTGGACTACATCATCACCCGTGAGCTGACCAGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.123
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.6)
A:
NA
C2:
PF0061614=RasGAP=PU(6.8=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAGGTCCCTCTGGATGCAC
R:
CGGTTCTGGTCAGCTCACG
Band lengths:
237-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]