RnoINT0124479 @ rn6
Intron Retention
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41432058-41432453:-
Coord C1 exon
chr12:41432336-41432453
Coord A exon
chr12:41432212-41432335
Coord C2 exon
chr12:41432058-41432211
Length
124 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCTCTCCTGTTTCCGCTCAGGAG
3' ss Score
7.75
Exon sequences
Seq C1 exon
GGGGAGCCTGGGTGCCCTGCGGCTGAAGGTGCGCCTCACTGAGGACCGGGTCCTGCCTTCCCAGTACTACCAGCCTCTCATGGAACTGCTTCTGGAGTCCGTGCAAGGGCCAGCCGAG
Seq A exon
GTGGGTGTGGCAACAGGTGCCTCGATCTGGGATCCGGGGCATAGCTTCTCCCCTCCCTAGGGAACCAGGGACTGCTGTGCTTTGGGGCCCCAGGTTATCTGTCTGCTCTCCTGTTTCCGCTCAG
Seq C2 exon
GAGGACACCACCAGCCCCCTGGCATTGCTAGAGGAGTTGGCCTCTGGGGACTGTCGTCAGGACCTTGCCACCAAACTGGTGAAGCTTTTCCTGGGCCGGGGCCTGGCTGGGCCCTTTCTAGATTACCTCACAAGGCGTGAGGTGGCACGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374:ENSRNOT00000001856:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061614=RasGAP=PU(6.8=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGTGCGCCTCACTG
R:
GTGCCACCTCACGCCTTG
Band lengths:
244-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]