BtaINT0122612 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63409559-63409937:-
Coord C1 exon
chr17:63409820-63409937
Coord A exon
chr17:63409713-63409819
Coord C2 exon
chr17:63409559-63409712
Length
107 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TGCCTCCTGTCCTTGTGCAGGAG
3' ss Score
10.72
Exon sequences
Seq C1 exon
CGGGAGCTTGGGTGCTCTGAGGCTGAAGGTGCGCCTGACCGAGGACTCTGTCCTGCCCTCACGGTACTACCAGCCACTTAGGGAGCTGCTCATGGAGTCGGTGCTGGGGCCAGCAGAG
Seq A exon
GTGGGTGCGTCACTGGGGGTGTGTGTGGGGAATCTGGATCATGGCCACACCCTGCTTTGGGGTCCCAGGGCCCCAGGCCACCTCTCCTGCCTCCTGTCCTTGTGCAG
Seq C2 exon
GAGGATGCCGCCAGCCCCTTGGCTGTCCTGGAGGAGTTGACCTCGGGTGACTGCCGCCAGGAGCTGGCCACCAAGCTGGTGAAGCTCTTTCTGGGCCAGGGCCTGACTGGGCCCTTTCTGGACTATCTCACCCGGCGCGAGGTGGCTCGGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061614=RasGAP=PU(6.8=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTGAGGCTGAAGGTG
R:
GCCGGGTGAGATAGTCCAGAA
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development