MmuINT0132012 @ mm10
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120663726-120664124:+
Coord C1 exon
chr5:120663726-120663843
Coord A exon
chr5:120663844-120663970
Coord C2 exon
chr5:120663971-120664124
Length
127 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCTCTCCTGTCCCTGCTCAGGAG
3' ss Score
8.66
Exon sequences
Seq C1 exon
GGGGAGCCTGGGTGCCCTGCGGCTGAAGGTGCGCCTCACTGAGGACCGGGTCCTGCCTTCCCAGTACTACCAGCCTCTCATGGAACTGCTTCTGGAGTCGGTGCAAGGGCCGGCTGAG
Seq A exon
GTGGGTGTGGCAATGGGTGCCTTGATCTGGGATGCTGGATCCGGGGCATAGCAGCCATCCCTGGGGAACCGGGGAACGCTGTGCTTTGGGCCCTTGTTCACCTGTCTGCTCTCCTGTCCCTGCTCAG
Seq C2 exon
GAGGACACCACCAGCCCCCTGGCTCTGCTAGAGGAGCTGGCCTCTGGGGACTGTCGTCAGGACCTTGCCACCAAGCTGGTGAAGCTGTTCCTGGGCCGGGGCCTGGCCGGGCCCTTTCTAGATTATCTCACAAGGCGTGAGGTGGCTCGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602:ENSMUST00000031606:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061614=RasGAP=PU(17.1=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGTGCGCCTCACTG
R:
GTTCGAGCCACCTCACGC
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types