GgaINT1025733 @ galGal4
Intron Retention
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2857960-2862633:-
Coord C1 exon
chr22:2862442-2862633
Coord A exon
chr22:2858090-2862441
Coord C2 exon
chr22:2857960-2858089
Length
4352 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CTTTTTCCCTCCTCCGTCAGTGT
3' ss Score
8.22
Exon sequences
Seq C1 exon
ATTACCACTCCATCTACATCGGGGTGCCGGTGCCCCGGGGATACCGGAGGAAGCGGCGTCGGCGGCGATCCGCCTCCAGCCGGGACCGGACCAGCGAGAGCGAGCGGCACTACGAGCGGCAGGAGCGCTCCGACACCGACGACGGCGGCCACGGCTGCTACGAGAGCGGCAATGACAACGCCAGCAGGACCA
Seq A exon
GTGAGTTGTCCTCTGGATACCCGAGAAAGCAGGAGGGGTTTTGCGGTGTGATGTAAATCAGGGTTAAATCACCTTCGCGCGCCCTGCTTGCGTTTCCTGCCTGGCTTTTGCTTTCGGCTCTGTTTTTCCCGGCGTCTGAGAGCTGTACGTGGGGCATGAAGCAGTATCTGGGGCTTCTTGTGTGATGGGTAGTCTAAAAAGAGATCCTCCTTGCACTTGGGAGGTTGCATGGAGTGGTACAGCGATGTTCTGGAGGTGCAAACATCCAATTCCCCCTTCCCAACCCCAACTCCTCCTTCCCAACCCCAACCTTGTTCCCTTCAGCCTATCACTCAGGACCTCACCCAGTCTCCATAATTCTCCTTATCAGAGGTTAACATTTTGCACAGCAAAGTGTTTGTTGGTCTCATGATTTATTTACTTTTTTTTTTTCCCACCACTGCACACAAATCTGTTTGGCTTTACGTCAACCCAACTGCTCTGCTGCCATGCCTCAGCAGTGCAGGAGGGATCTCAGCTATAGTTTTCCCCACGGAGGGAAATGTTCTGCAGCTTTTTGCATGGGGGCAGAGTTGGCTTTTGCAGCCTGAACTCAGAGGAAATGCTGCAGGTGGTTTCCCCACTTGGCTCCGAGCGGAAGGAAAGCAAACCACCTCCCCCAAAGCAACCCCAGACCCGTCCCTGGGGTTTTGTTCTCCCGTCCCTCCCCTCCCTGGCCTTGCTGCCACACATGCTCCCAAGTGCTCACCTCTCCTGAACGCATCTCGCTTGATTTGGTAACTTCCCGTCATGAGAGCTGAAGGGAGAGGAAAGTGCTTTATATTCTCTATAATCTGCTCCTTAAGCCTGGGAGTTTAACGGGCTTGAGTGGATAAAGGAGGAAGTTTGGGGGCTTTTGTGCTGCGCAGGGAAGGTTTGTTTCGACGGGAAGAAATGGGGGAAAAAAAGGACACCATTCCAGGTAGGAGTCAGCACTGTGTGCTATTCCTGCTTTGTGGTCACGGCGGAGGGAGCGGGAGGGGAGGGGAGGAAAGTCCCCATTGCTTTGGGCTTTGCTTCTCCCTGGGGTCAGCACGGGGCTGGCACAAGTTCTGGTGATGCCGATAGCTGGGATGAGCCTGGGGACACCTCAAAATGGAGCGGGGGGGGGGGGGGAACCTCTATCAGCACCTATCCCAGCTCAGGGAAGCAGCACAGGCAGTGTTTGGAAGGATAAACGCCAGCCAGACCTGGGGCCATCTGATCTCTTGACATGAATGGGAGCAGAGGTTCTGGTTGCATGGGATGCACGCCCTGGTCTGGTGTTATCTGGGGAGGGGGGAAGGTCCATTCTGAGCCATGAAACTCAGGCAAAAGGCTGCTGTGGGGTGACAGCGGGTGGTCAATGTGCGACAGCCTGAATCAGAGTCTGCAAAGGGAGCGGTGTGTGGGGTCACGCAGTCCCTCTACCAGGTGCTATCCGTGGGCAGCACCCATGGATTCCCCCTTCCCATGGGACATCAGCCTATCTGTACTGTACCACTCAACGAGCCCCAAAGGCAGAGTGGTTTGGATGGGCGCTGTTGGCTGAGGTTCCACTGCTTCATTAAATGTGTGGTGTGAAGGGCTCTGTGCCTCTCCAGTTGGTATAACTCATCTGTCCCATGCAATGACCCGCAGAAACCTCAGCTCTTTTGTGCATATAATTATCCTGAATCATCAGTGTTAATGCTGAGATAGTCCCACATCTCTGGGCTTGATTTGCATCCACTGCAGCTTGAATTAAAAGTGATTTGCTGGGTGTAAATCAGAACAGACAAGCTGTGAGCATCTTCCCACCATAAGAGCTGATCAAGGGAGGTACAGACCTATTGTATGCATGATATCTTGTTTCAATGATACCTTGTGAGATGCAGGTGCTGGTTCCAGGTGTCTCTGCAGCACTTTTGCATTTCCCAAATGCAAACCACATCAGCACACAGCATCCTCAGGGGATGTTGCTACGCAGACCAGTAGCAAACTGGGAGAGCTGAGCAGCAAGATGGGATGGATGTGAATGGCATCTCCCTGCCCTTCCCACGTCCTCTGAGAAGATGCCACTGTTCAACATATCCTCCCAAACCGGTGATTTCCAGGATTAATTTTGTGGTTGGATCGTGTTTGCAGAAGGAGCAAAGATCTGCAGCCCGGTGCAGGGCCAGGAGGGTCCTCCAGGTGAACAAATCATGAGGGTTTGTGGCACAGTGAAGCCCCAGAGCTTCAGCAGTCGGTTCAGCAGCCAAGAGACAAGGGTATTCCTGCAGCTGGCAGTGGGAATATGGGCAGTGCTGTGAGCAGTGATCACAAAGGGAATGGAGCTACAGCCCATGCTGACCCATTCCTGGAAAACTGTAAAACCCCCTTTCTGTAATGCATCTGGAGATGCCACCTGGAAAGGGCATTCCCAGCAGCTGGTTTTGTTGCAGTGCAGCTCATGGCAGCGTTTAAGGTTTGTGGTGAATTTAGGTTTTGCAGAGAAAACACAAGTCTGATGGGGTAGGGGGGGGAGGGGGGTTGGGATGGTTCAGTGTGGAGAAGAGGAGGTGCAGGGCTGAACTTATGGCTCCCTACAAGGCCCTGAAAGGAGGTGGTGGTGAGGTGGGGTTGGCCTCTGCCCCCATAACAGCGATGGGATGGAGAGGTGATGGCCTTAAGCTGCACTGGGGCACGTTCAGGTTGGGTATTAAGGAAAAATGCTGAGAAAGAGCAGCGATGCATTGGCACAGCTGCACAGGGGGGGCGGGGGTGGGCACCATCCCTGGAGGTGTTCCAGGATCGTGGAGATGTGGCACTTGGGGACATGGTCGGTGGGCACGGTGGGATGGGTTGGGGTTGGGCTTGGGGATCCTGGAGGTCTCTTCCAACCGTAGTGATTCCATGATTCTAGGAGGATAAAGACCCTGTAGCCATCCAGGCATGTAGCCCGGCTCTAAAACGAACAGGAATATTAAGGATCTTCATAATCAACGTTATGGAAGTGCAGGGAGGACTTGACAACGGGGCTTTAGCCCTGGTGGTGTGGCTTAAAGCGCTTAAGCGGTTAAGCAGGCTCAGCTGGACTGCAAGGGACATCCTATTCTTTCCCAGTGGCCACGACTCGGCCTTCAGCTGATCTGCTGGCAGGACAAGGCAACGCTCCGGCGGCACCGCGAGTTTCTCCCCTGCATGGCAACCTAATGAGCCGTGTGCTGCATTACCCGACTTTCTTATTCCAGGGTTTGGGAACAGGAGGATTCCGCTAACAAAGACATTTTCATTGCTGGATTAACTCCTGCCATATTAGGGGAGGGCTAAGACCCAAGATTTTATTAAAAATACACCATTTCCACGGAGCCCGGCGGAGGGCTGATTATCCTCTTATTCAAATAGCTGGGCAGCTATGGGGAGAGGAGGAACGGCCCAAGCCGCCCCGTGTCCATTTGGGTTGAGCACCCCAAAGGCACAAATCTCTTTCCCTGTCCTAATTGAGAATGGGCTGAGCCGCACAGGTTGGCAGCTGGGTGATGTGCTGCAGCTCTGCTGCCCAAATAGGGGGGGAACAGGGGGGCAGGGGGTGTTCTTCCCAACCTGGCCTGCAGTTTGTGGCAAAAGAAGTGGATTTTCCTGCAGAAATGGTAAATTTGGATCGTTCCTCTTGAAAGGGGGGGGTTGGGAGCTGGAGAGAAAGTGTAGAGCTCGTGCATCCTGATATGCAGTGCCAGGCAGTAATGATGTGGATGGGGATTTGGTTGCTGATGGCAGACAGCTCTGACCTGGCAAACTCCATGAATGAGAAAAAAAATGCAGGAGATCCCATGGAAACGGGGTGCAGAATGCTCCCGGGCTGAGAATTCAATTGCATTGCATGCAGGGCTGGCTGCTTTCTGCAGTTCACAACCTGCCCGATGCCCATTAGGTAATACATCGGTGTGTACATATATATATATATATATGTATACCTATATATATATAGGTGAATATATATATATATAGGTATATATTACCTTCCTGGCTGCTATACCCCTTCTGCTCACCCTTTCCTTCAGCATCCCATACCTTTAGTGGGCATGGGAGGGATGGGTTGATGGTTGGACTGAATGACAGTGGTCTTTTCCAATCAATTTAATCTCTTTGCACAGAGATTTTGGGACAGATATACTCGGACATCCCACACTCCTCATTAGCTGGTTGGCACCTTCAATGTTTTGCTCAAAATCCCTCTCTTTTTTTTATTCTTTAGCCCTGGCATCCTAAATAACCAAACAAATCAGTCTCCCTTTCTTGCTGGGCTCTTCCTGCAAGGGGTTGGCTTGAGTTCATCTCAGCACAACCCTTCTTTTTCCCTCCTCCGTCAG
Seq C2 exon
TGTCACCGGCTGCTGAACGTCTCCGCTACATCCTGGGTGATGATGATGAGCCTCCCAACCCCACCCTCTTCACAGAGATGGACACACTGCAGCACGATGGGGAGGAGATGGAGTGGAAGGAGTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515:ENSGALT00000022007:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]