MmuINT0147204 @ mm10
Intron Retention
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83237375-83240739:+
Coord C1 exon
chr6:83237375-83237762
Coord A exon
chr6:83237763-83240609
Coord C2 exon
chr6:83240610-83240739
Length
2847 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ACTTCTTCATGTTTTTTCAGGGT
3' ss Score
10.73
Exon sequences
Seq C1 exon
AGTCCTCAGCTGCCACCACCCTGCTGCTGAGGAGCACACAGGTCCCTGTTTGAGCTTCAGCGCTAAGCCTCCTCTCTCCATCATACCTCAGATTCCCCCGCCCCCTTTCTTTCTCATTTGCTGGTTTCTCCCAGGATTTCCACGAAATCACTCACACCCATCGCTATTTCTCTCGAGCCCCAATCCCCCACCTTCCCTCTCGTCCTTCTCCTGCCCTCCTCCTCCATGCCTCCCTTGCTGCTTAACTAGAAACAAAAGTGAGTTTGTTTTGTGGGGAAGAGGATACTGGAGGAGACCCACAGCCAGGGTAGCAGCCACAGAAGCAGGCTGGGGCCAGAGGCAGCACCAACCTCCGGAGACTCCAGCGCTCAGCTGTTCCAGGGAGCAG
Seq A exon
GTACTGCCCAGACAGGCTGGTGCTCGCTCGGATAGACCCCTACTCTGCCTGTGCTTTCTAATCTGCTATCTCTTAAGGATCTGTCCATTTATTTGCCTTCTCCTGGCCTTGAAGGATGTGGAAGATTGCAGATATACAAAATAGGGGACAGAGGTCTAAAGGATGGTATGGTCCTTGTTTTCAGAGAACTGTATGTGTGATTCTGATGTGACTGGGCTTGGGCACAGCAGAGCCAAGGATGCACTAGGCTAGGTCCAGATTGCTGGCGATGGTTTGAACCATATCACCAAACCCAAGCTTTAGGTAATGAAGAGCCACCCAAGGCTTTTCAGCTGGAAATCCACGAGAGCAAATCTACACTTGAGTTGCTATCGGGCTAGGGATGCAGCCCAGTGGTGGATTGCTTGCTAAGTGCAAACAGGTCCTGGGTCCCGTTCCCAGCAAGGCAAATCCAAAACTGAGCAGTAGCTAATAGACTGATCCCATAGGGAATTGGTTTGTTTCTTCAGAATCAAAGAGCCATAGTCATCTCCCAATTTGAAGGGAGAAAAGAGAAAACAATGAGGTTTTTGTTTGTTTGTTCTGTTTTAGGATGGTTGGTTATATATTTGTATATTTATTTATTTAGGAGATAGGATCTCTCTTTGTAGCCCTGGCTTTCTGGAAACTCACAATGTAGACCAAGCTGGCTTCAACCTCAAAGAGATCCCTTTGCATCTGCCTCCCAGGAGCTAGGATTAAAGGTGTATTGCCATAAAGGCACTATGCCTACACAAATTACCTTTTTTTAAAAAGAAATTTCCTTAAACTCAATAAGCCAGTGAAATAAGTTTAAAACAATAGAAACATTTCAAACTCAGATACATCTAGATCAGTGACGTTCATTGCGGGTCTATAACCACAGAAGTTACTAGCACTTTTTTCTGCTAAGAAAATCGTTTCTACCCTGTGTGGACAGGGTCCCCCTCAAAGAACGCTATGATTCTGGAAGTCCACTGCACAAGCTTGCTAGGAATATTTAAAGAGCGAACTCGGCTGCTGCCAGGCCATGGATGGGGTACCCAGAGGTGATGAGGCTGGGGAGGCAGCAGGGGCTGTTGGACGAGGTGCTGAGGACGGTGAGTGGAGGAAGGATCGGCCCCAAGGGTGGTGGGCAGCAGGGTACAGGCTAGCAGAGAGGAATCTAGTGGACTTCACACCTGCATGCCTTTATTTCCTCTCGGAAGTGGGCTAGAAGCCTAAGAAGTTTACTGAGAGGGACTAATGGTTGGGGCTGGCTCTGAGGGACACAGGAAGGGTGCAGACAAGGCCAAGCGGAAGGTTCCACGGCCAGAGGTTTTCTTCCATGAGTGCTGAGCCTGCATCCTGGGGTTGGTGGCGGTAAGAGGCAATAGGGCCATCTGTGGTCTAAGCCTTGTGACAGGTGTATCATGCTCACACGTAAGCGCTAACTGTGTGACTCATGTCCAGGTGGACTGTGTCTCCTACCTCTGGGACTCCAGGACACGTTCAACATGAAGATGATCGTGGTCCGTGGTGGGTCCTTGTCTGGGTGCTGTTGAATGCCTGGCTCTACCGGGAAGTTTCAGGGGAGAGAGAGGTTAGGTTTGAAAAGAGTTCTTCAAAATACGGACAGGGAAGGACCAAGTGATCAATAATTGAAGGCAGAAGTCGGAGAAACTGAAGAGATAAGAGACTCAGAAGAGGTGGGAAAGCTTCATGAGGTCAGTCTGCGGACAGTTGGTGGGAGGTTGAGTGAGGGGGCTGATGAGCAAGTAGTCTGGAAAACACACGGAGGAGATGGGAGGAGCCAGGGGAGCCAGGGATGCCTTCAGGCCATCGTTTGACATCTTGTCATCCCCCTGGGCAGCTCACTGAGTTGCAGCCACACTGCCCTTCACATGCTCATGGGCATGCTCACCACAGGGCATCTACAACACACTTCCTTCCCCCTGTGTCCAAGTCACATTTCAAATGCCATTTTCAGAGGGGCTTTGTGGCCAGCATACTCTATAGCTTCCTGTTTTCCTTGGTTGTTTTGTCTTTTCTTTTCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTTTCTTTTTTTCAGAGCCCTCACCACTATCCCAAACGGTTGTTTATGGATTTGTTTACCTGCTTGTTTCCGGTCCTTGCCGTAGCTAGCACGTGGATCATTCCCACAGCTTTATTTCCCAGTCCCAAGGACGATGCCTGGCGCGGAGCTACTAGACAACGGGAAGAGGGAGGGAGTGGAAAGGAGGCGCCTGAGAAATGTTCAGGAGGTGGCTTCCAGCAGGTCACCGTGAGGAGGCAGGATACCCAGGAATCAGGCCCCCCTCGCCAGTGTGAAAGCCCACAGGGTGCTCTAGCCCCACCTTTCCGTGGACCCTCTGCCTCCTCGTGACCGCTGACTGCTGGCTCGGGACCCAGCGGAGCAAAAGAGAGTTCTAGGCTTTTGTGCGGAGTGTTGTTGGGTCAAGGTGTTCTGCTTTTCACTTTCCCAGTCCTGGATCCTGCTGCTGCTGTGCCTTTAGCCATTCCTCAGCCTTCACTGTCACTTATAAGACCCTGGAATCTAAACACAGCCCAAATTCCTTCTTATCTCAAAGATTAACACCTGCAATCCAGTCCAAAGGGACAAGAGTTCAGCTGACCCAGAAAATGGACTGAGCCTCAGAGAATGGAGAAATACCCCTCCCTTGCCCGGGTGCCTGCTCTGTTCCTGTGGGCCTTGGGGCCCTTCTGGCCTTTGGGCACTCGGCAGACCCAACTTCTTCATGTTTTTTCAG
Seq C2 exon
GGTCTCCAGCTGCTGAGCAGCTGCAGGACATCCTGGGGGAGGAAGATGAGGCTCCCAACCCCACCCTCTTCACAGAGATGGACACTCTACAGCATGATGGGGACCAGATGGAGTGGAAGGAGTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323:ENSMUST00000113899:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.679
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types