GgaINT1031318 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr26:4086226-4089127:-
Coord C1 exon
chr26:4089080-4089127
Coord A exon
chr26:4086343-4089079
Coord C2 exon
chr26:4086226-4086342
Length
2737 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
CTCCTTCCCTCTCCCTGCAGAGA
3' ss Score
13.32
Exon sequences
Seq C1 exon
GGGAGAGACACTTCCAGCAACACGTTATCCTTGAGACGTTTTCTAATG
Seq A exon
GTAAATATTTTTGTTCTCTCTTTCTCTGTGAAGGGGTCTCGCCTCGAGATGCTCACTGGGGGGGTGAGCTTTGGACTAACTGCATGCCCGCTTTGCACGGCCGCGCTGCCAGCACTAACAGGCACCGCTGCTGCTTGCACGCTGCGCCAGCACACCTTGGGCTGCAACCAGCTCTGCTTTTGGGGATGCACAGAGCAGCAAAGCCCTCCCTGGCTGTGCTTGCATGATGCTGGGCACTCGCCTTGCCTGGGCCGGGGGTGATGGTTTCCTTGTGCCCATCTCTGCAGCTGTGGCTAAGGTGGGAGCGTTGGGTGGGAGCAGTGCTTCAGAACCGCCCCGGTGCTCCGCTCTGTCCTGTTGGGGATCAGAGCCACCTCTTGCAGTGGGGCCGTTACAGGAGGCGTCTGCAGGAGTTGTGCTGCAAGACCAGGGCACCAGGCATTGCTCAGACCGTGCAGGGCTTTCTCCCTGAAGTGTTTGCAGCCTGCACTATGCACCTCTCCCCACGTCCCCTCCTCTCTTTCCTTCCCCATCAGGTGACTGCTGGCAGCACCTGCAGTGACCCCCCTCCCAGGAGCCCTTGTCCCCAGCTCCTGGTGACACATGGCAGCACTCCCTGGCTCTTCCAAGAGGATCCCTTCCCTGAGCCCCACCCCACCAAACCTCACTTTGGGGGCTCTGCAGAACCTTCCCTAGGCTCCTTCTGCAGGCAGCACCAGGGGGACCTTCAGTTTGGTGCTGAGCACACCAGACCCTGGTCACTCCGTGCTTCTCCCCATAAGGCTGTGGGGCTGATGTCCCTCTGCTGCCTCCCGGGAGGTGGAGGCAAACCTGGAGCAGTGCAGGCAGTGGGAGCGCGGGGCACACATGGGGCGCGTTTGGACCCGGTGACAGTCGGTGGCAGTGGAGGACACTGCAGGGGCATTGTTGTGGCACAGTGAGGTTAGGATGGAGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGCAAGCTACTTTGTCTTCTTCCTCCCCAGGCAGTGGGGGCCCTCACCAAATGCTGTGTGTGCAGTGACTCACGCTGGCTTGCAGCTGCCAGCACCGCTGAGCAGTGCTCCTGTCCCAGGGCCACAGCATCCATCCCTGACCCTTCATTTTCAGCTACATCAGAGCCCTGCTTTGCTTACAAAAGCTTTCTGCAAGTTCTGGGATGTGCCTCTTTGCTTTGCAAAGGGCTTTGCTCTGCTGTCCCTGCAGGGCTGAGTCCTGTGCATCCCATGCAAAGCACTCTCTGCAAAGCTCAGCCCTGACGGTGCAAAGGGGATGGATGGCCGGGAAGAAGGGAGCTGTGCTCCTGTTGCTCCAGAAGCGTGGGCTTCACTCTGAGCAGTGACACCATTAACCCATTCCTGTGGGCTCTCCCTGACCGAGCTGCTGCAGCAGAGCTGAGTTAAATTCTTAATGCAGCCTCCAAGAAGTTCCCCTTCCCTTTGGTGCAGCGTTGTCTGCCCTGTGCTCTTTGCTGGTCTGGGGCTGCAGGGTTCATATCTGCAGAAATCCATCCCTCGCCGTAACGTTTTGTAATTGTGCTGGCTATTAATTGCATGAAATGGTCCCTTTGTTCTCCTATTATGGGACATCATAAAAATAGCAGCAACAAGACGAGCACAGAACGATCCCAGCTCCGTCGCCCTGCAGCAAATGGTTGCACGGTTCCGTCACTGGGCCCCATGCAGAGCGCAGCAGAACCTGGGATTTGCTCTTTCCAAGGAATTTCTTCAAGGCATTTTCATGTCGGGTTCCTTGAAGCCTCATTTACCCCTTGCCCGGCCCTCCGAAGGGAAAGGCTTTATTACCCTCTGTGAACAACTTCATGCACTTCAAACCATTGTTCTGGCGGTTAGGACCCAAATTGAAGATTGATGTCACAGGGAAGCTGTCAAGCTGAAAACGCTTCGTTTCAATTAGTGCCCCTTCTGCTTTTACCAGCAACAGCTGACTTTGATAATGCTGGAAGAATTAGCTTTTTTTTTTTTAAGGGATTCTTTTTTCCACTGATGCTGCTGGCATGTATGTGTGTGTATGTATGTATGTGTGTGTGTATGTGTGTGTGTATTCTAATTTTACAAAGCATCTCCCAAATAAGCCTGGGCAGCCGGATGCCCATTGGTGACACGTGAGGACAGCACGGACGTGGGTTGGGCAAGGAGAGCACTGTGAGGCAGGTGGGTGCAACTGATGTGGGGTGAGGGCTGTGCACCTGAGTGCATCTTGCACAGCTGAATGCTGACAGCGCCGTGTGTCCCCCACTGCCTGCAGCCCTGCTCTCGTGGAGGCTCCTGAAGAGTCCAAAAGTGTTCTGTCCTTTGTTTTATGGTGGCAAACCCCCCCCTTCCCCAGCACTGCTCCGTCCATACCTGCGCTGCCCTCGGACAGACAGATGGGGCTGTCCCTGCTCCCATGTCCCACCACAGGGACAGATACCCCTTCTCAAGTGCCGGATGCTGGAAGGCAGGAGGGCCGTGCAGAGGACAGGGCAGTGGGAAACCTGGATGCTTTTCCCTGCCTGCAAGCTGGGATGTGCCACATACACTCACTTTTCACCTCTGGATCCCACCGGGTCCCCTCTCTGTGCTCGAGGGCGTGTGTTAACCGGGAAGCATTAAAAACCCACAGGTGTTTCAGTGGGGCAGGGATTGTGGCCCCCCCCTCCGCCTCCCCTCATCTCCTCACTGCTGTGCTCCTTCCCTCTCCCTGCAG
Seq C2 exon
AGACCTGTGCTGTGAACAACGGGGGCTGTGACAGCAAGTGTCACGACGCGGCCACCGGCGTGCACTGCAGCTGCCCCATGGGCTTCATGCTGCAGCCCGACAGAAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675:ENSGALT00000004215:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]