GgaINT1031344 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:4396896-4397242:+
Coord C1 exon
chr9:4396896-4397012
Coord A exon
chr9:4397013-4397116
Coord C2 exon
chr9:4397117-4397242
Length
104 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CAGCATCCCTGTCCCTGTAGGTG
3' ss Score
9.47
Exon sequences
Seq C1 exon
ACCCCTCCTCCTGCGAGGACCGGAGCTGCAGGAACCGGCAGACGTGCAACTACATCCGCCCGGGACGCTACATCTGCACGTGCTCCCCGGGCTATTATGGCAACAACTGCCAGTACG
Seq A exon
GTGAGCGGCAGTGAGGGGATGTCACAGAGGCACTGGGCTGTGCAGAAAGGGCACGTCCGGTGTCCCTCTCCAGGACATATCCAGCAGCATCCCTGTCCCTGTAG
Seq C2 exon
GTGGCCCCCGTGTGCCCAGTGCCTGCCTCTCTAACCCCTGCCAGAACGGGGGCAGCTGCCTGGAGCTGGAGCAGGGCTATGCCTGTGACTGCCCAGAGGGCTACGCCGGGCAGGACTGCCGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039:ENSGALT00000009725:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGGAGCTGCAGGAAC
R:
CAGTCCTGCCCGGCGTAG
Band lengths:
218-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]