GgaINT1031447 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr11:9248056-9250673:+
Coord C1 exon
chr11:9248056-9248160
Coord A exon
chr11:9248161-9250538
Coord C2 exon
chr11:9250539-9250673
Length
2378 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TCTCCACTTCTTTTCCTTAGGTG
3' ss Score
11.14
Exon sequences
Seq C1 exon
ATGTCGAGTATGCGACTTCGCCACCACAAATATGAATAGTTTGAAATGCCATATGAGGCGTCACCCCCAGGAGCATCAGGCAGTGCAGCTAATGGAACAGTACAA
Seq A exon
GTATGTAACAGTTTGGATTTAGCAAAAAGATGTGATAGTAGTGATTTTGTATTCAAGATATAAGGCAGAGTTCAGATTATATTCTTTTCCCTCCTAGATGCATTCTTTGTTCTAGTGACTTTTTTTTTTGAAAGAGGTTTGATGGGGGATGTCTCTCTTTCTTTCCAAAATGGTGTAGTTGCATTTAAACTGCTTATTGCAAGAGGTTACTTGACTGTGTTAGTTACCAAAGCATGCTCAGAATTGTTTGGGAGAATGCATGTGCCAAAACCACTTCCAACAATTATAAATCATTACATTCCAGTGCCCAGGAATGTTTTCTGGCTTTGTTTAATATCCTACTCTGGGCACAGCCCTGGTAAGAATCCAGATTTGAATCACACTGCCCTAAATAAAAGTAATACGAGTGGTTATGTTACCCATAATATTTCATTTAATATACGTCATATTCTAGATAAAGATCATGAAGCGTATAGCATCAGACTAAAAGTTGAGTTTCTTCTTTGATGATGTATGCTAAAGCAGTCAACAGCATTTAGCTCATGCTCTCAGCAAAGTAAATCTGGTAGTAAATTAGCTGTTCAAATTAATGCATTTAAAAAAAAAGACTAATTAAGAGGGGTTAAAAACACTGAACTATTGCTTCATTCAGCATGTACCAACCCACTGAAGCCCAGTTGTATGAGTTGTGCAGAAAAAGTTACATAACATCACATAATAAAACACTAGTGGAATGCATATGCATATGGAATAGATTCAACATTATTTCTTTTAGTTTGTGTTTTGCAAAATCTTATTTTGGCCTAATTTTATCCGTAAGTGAACAGTGAGGTCTGCCTTTTATCTTACATTTAATGCTGGCATTGTTTTGAAAAAGCATTCTCAGAAATACTTAGAGTTTAGATCTGAGGGTGAAGTTATCTTTGAAAGCGTCTGTTTTATTTACAAGGCTTCAAATTAGAAGGAAAAGGGAAAAACTGAATGTGCGTAATCACGTAATAGAGATAAGTTGGGCTAGGACAGGCCTGTTGTTCTGCAGCAGGACAGAATTATGCTCCTACATAAAGGCAGCAGTGGAGTGATGTCATCTAGCATCACTTCTCTCCTTCACACTGCAAGGACTAATTTATCATCTCAGAAACACGTGCAAAAAATACTTCCTCTGCTGTATGCTCATGTATGGGAAAAGTCCTTTGGGATTTATTCGTAAGGTTTTTTGTGTCTGTAAGTATGCAATATATTGCTACACAAATATTATTTACTTTTCAAGGTTTTTCAGCTGTTCTGCACAGGAGGAGGAAACATTTGTTGTTCCATCCTGAATCCTGCTGTTTATTTATCTGAGTGTCAATAGTCTGAATTTGCAGCTGCTTTTAGAAAGAGAGATTGGATTATTGGGAAAAAGATAGAAAGATGTACCAATTATTACCTGCATTAAGCATTTGTAGTTCTGTTTAATTGATTGAAGTATATGTTGAATTCTTGTTCCTATACTAAGTAATTGGAATTGTATACATAAAAGCCTTGTATCCAAAAGTCTAAATTAAATTTAAAAGGACCAAAAAATACAGCTAAAATTTGAAAAGCATTTCTCAAACTGTTGTTCCTCAAAAGATAAATACAGTTTAATAAGTAGGATTATTTAGGATGTTATTTTTTTCTAAATTTTATGTATAAAATTCGAACTGAGTTGAAGAACAAGACAGCACACCTTACAGGACATTGTTCTAGAGATAGAAAATTTGTGGTGCCTCGACCCAATGGACCACTTTATGGACAAAACACTGTCATGTGTATGAGTTTCAGTCTGCATTATTCCATATTATATTCCAAAACTTGACTGGATGCTGCCTTGGGAACCTGCTCTAGTTTCTCCTGCATGAACAGCTGGATGGAGCAGGATATTCTCTAGGGGTGCCTTCCAACTTCTGCAATTCTGTGATCCTCAAATAAACTAATACATGCTGCACCAAGAAAGGCTTTATCAATTCTGTTTAAATTAGCAGTGCTAATTATTACAATTTCTGCTTGGTTCAGAGCAATGGCAGAGAAAACTCAGCCTGCCAGCTGCCATACAGATATACTCCATGTTTCTGCAGTCGTTAGAACTATTTCATTTTTGCAGTATTTAAACAGATTTAACAGGTCAAATAGATAAGATTTCAGTTAAGTCGTTTAAGGAGTTTAAAAAGCCGATCTTAAATTCTCATACTCTCTAAATTACATTGTAGAATGAAATTGTGCAAACTTATTTCACCTAGTTATGAGGATTGATGTGTATCTTACTGCTGAGTCATCCTTTTGGGAGAAAAAAATGCATTACCATTATAGTAAAACTTAACTCTTAAATGCATCTCTTCTCCACTTCTTTTCCTTAG
Seq C2 exon
GTGTTCTCTCTGTGGATATGTATGTAGCCATCCCCCTTCCCTGAAGTCCCACATGTGGAAACATGCAAGTGACCAAAATTATAACTACGAACAAGTCAACAAGGCTATTAACGATGCAATTTCACAAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004532:ENSGALT00000007217:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]