DreINT0181445 @ danRer10
Intron Retention
Gene
ENSDARG00000052164 | znf507
Description
zinc finger protein 507 [Source:ZFIN;Acc:ZDB-GENE-040426-1233]
Coordinates
chr7:46981657-46981983:+
Coord C1 exon
chr7:46981657-46981761
Coord A exon
chr7:46981762-46981848
Coord C2 exon
chr7:46981849-46981983
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
ATCCTCTGTCTGTGTTACAGGTG
3' ss Score
11.4
Exon sequences
Seq C1 exon
GTGCTGCAGCTGTGATTTCGCCACTACTAATATGAATAGCCTGAAGAGCCACATGAAGAGACATCCGCAGGAACACCAGGCCATGCAGCTGCTGGAGCAGTACAG
Seq A exon
GTGAAGAGCAGACGGCGTGGAGGAGCCGGTGTGCAGAATTGTACTCCTCACGGACGTGGCTCATATAATCCTCTGTCTGTGTTACAG
Seq C2 exon
GTGCTCGCTGTGCGGTTACGTGTGCAGCCACCCACCCTCTCTCAAATCCCACATGTGGAAACATGCTGGAGATCAGAATTATAACTATGAGCAAGTCAACAAGGCCATCAACGAGGCCATTTCCCAGAGCAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052164:ENSDART00000162237:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=0.217
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(38.5=27.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATGAAGAGACATCCGCA
R:
TGGGAAATGGCCTCGTTGATG
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]