HsaALTD0005769-2/2 @ hg19

Alternative 5'ss

Gene

ENSG00000137872 | SEMA6D

Description

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:16770]

Coordinates

chr15:48060778-48066418:+

Coord C1 exon

chr15:48060778-48060812

Coord A exon

chr15:48060813-48060945

Coord C2 exon

chr15:48062694-48066418

Length

133 bp

Sequences

Splice sites

5' ss Seq

AGGGTAAGG

5' ss Score

9.16

3' ss Seq

GTCCCATGTGTCTATTTCAGGTG

3' ss Score

12.41

Exon sequences

Seq C1 exon

ACATGGAGGTATCTTCATCTTCTGTTACCACAATG

Seq A exon

GCAAGTATCCCAGAAATCACACCTAAAGTGATTGATACCTGGAGACCTAAACTGACAAGCTCTCGGAAATTTGTAGTTCAAGATGATCCAAACACTTCTGATTTTACTGATCCTTTATCGGGTATCCCAAAGG

Seq C2 exon

GTGTACGATGGGAAGTCCAGTCTGGAGAGTCCAACCAGATGGTCCACATGAATGTCCTCATCACCTGTGTCTTTGCTGCTTTTGTTTTGGGGGCATTCATTGCAGGTGTGGCAGTATACTGCTATCGAGACATGTTTGTTCGGAAAAACAGAAAGATCCATAAAGATGCAGAGTCCGCCCAGTCATGCACAGACTCCAGTGGAAGTTTTGCCAAACTGAATGGTCTCTTTGACAGCCCTGTCAAGGAATACCAACAGAATATTGATTCTCCTAAACTGTATAGTAACCTGCTAACCAGTCGGAAAGAGCTACCACCCAATGGAGATACTAAATCCATGGTAATGGACCATCGAGGGCAACCTCCAGAGTTGGCTGCTCTTCCTACTCCTGAGTCTACACCCGTGCTTCACCAGAAGACCCTGCAGGCCATGAAGAGCCACTCAGAAAAGGCCCATGGCCATGGAGCTTCAAGGAAAGAAACCCCTCAGTTTTTTCCGTCT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000137872-19-18,21-18-2/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features